Affymetrix Facility Documentation
 
Affy Facility Docs Home
Running Chips
Pricing
Sample Submission
SBEAMS
Download Data
Annotate Samples
GetExpression
Get Affy Intensity
Analize Data
Analysis Pipeline
MEV
Affy Help Pages
Affy Core Help
SBEAMS Help Pages
Analysis Help Pages
Tutorials and Presentations
Other Resources
Affymetrix Home Page

Group Affy Arrays

Grouping Affy Arrays is the first step of the analysis pipeline. To Start a new session follow the instructions below. Remember that arrays from many different projects can grouped together


Follow the steps below to get to the page to start grouping together Affy files or Click the link

1)Log into Sbeams
2)Select the Microarray Link in the main navigation bar
3)Select the Project of interest at the top of the page
4)Select the Data Pipeline Button on the main navigation bar
5)If the project has Affy data a link to "Affy Analysis Pipeline" will be displayed at the bottom of the page, Click the link
Click on the "File Groups" tab to start a new session
Click the Start New Analysis Session button to start selecting arrays. Start Session
Image could not be found
Click on the project of interest. Arrays within that project will show up below. Use the checkboxes to select the arrays for analysis. You can select arrays from different projects. T

1)Click on any of the column headers to sort the rows
2)Click the check box at the top of the arrays to select/de-select all arrays

Image could not be found
As arrays are selected they will show up in the upper portion of the window. To add additional arrays go, select a new project and select the arrays of interest. Select Arrays
Image could not be found
Once all the arrays are selected click on the "Start Normalization" button
Learn more about starting a normalization run
Go Back to the Pipeline Overview
Go Back