source_ontology subject_term_type subject_term_name relationship_type predicate_term_name object_term_type object_term_name object_term_definition mzXMLOntology Root mzXMLOntology Root mzXMLOntology An ontology developed for use with mzXML documents mzXMLOntology Root mzXMLOntology hasClass Class msRun A set of consecutive scans with a mass spectrometer mzXMLOntology Class msRun hasClass Class msInstrument The mass spectrometer instrument that generated an msRun mzXMLOntology Class msInstrument hasClass Class msManufacturer The name of the manufacturer of the mass spectrometer mzXMLOntology Class msManufacturer hasInstance Individual ABI / SCIEX Applied Biosystems/MDS SCIEX Joint Venture mzXMLOntology Class msManufacturer hasInstance Individual Bruker Daltonics Bruker Daltonics mzXMLOntology Class msManufacturer hasInstance Individual IonSpec IonSpec corporation mzXMLOntology Class msManufacturer hasInstance Individual Shimadzu Shimadzu corporation mzXMLOntology Class msManufacturer hasInstance Individual ThermoFinnigan ThermoFinnigan from Thermo Electron Corporation mzXMLOntology Class msManufacturer hasInstance Individual Waters Waters Corporation mzXMLOntology Class msInstrument hasClass Class msModel The name of the model of the mass spectrometer mzXMLOntology Class msModel hasInstance Individual microFlex Bruker Daltonics microFlex MS mzXMLOntology Class msModel hasInstance Individual ultraFlex TOF/TOF Bruker Daltonics ultraFlex TOF/TOF MS mzXMLOntology Class msModel hasInstance Individual ultraFlex Bruker Daltonics ultraFlex MS mzXMLOntology Class msModel hasInstance Individual autoFlex TOF/TOF Bruker Daltonics autoFlex TOF/TOF MS mzXMLOntology Class msModel hasInstance Individual autoFlex II Bruker Daltonics autoFlex II MS mzXMLOntology Class msModel hasInstance Individual OmniFlex Bruker Daltonics OminFlex MS mzXMLOntology Class msModel hasInstance Individual HCTPlus Bruker Daltonics HCTPlus MS mzXMLOntology Class msModel hasInstance Individual HCT Bruker Daltonics HCT MS mzXMLOntology Class msModel hasInstance Individual esquire6000 Bruker Daltonics esquire6000 MS mzXMLOntology Class msModel hasInstance Individual esquire4000 Bruker Daltonics esquire4000 MS mzXMLOntology Class msModel hasInstance Individual APEX IV Bruker Daltonics APEX IV MS mzXMLOntology Class msModel hasInstance Individual APEX-Q Bruker Daltonics APEX-Q MS mzXMLOntology Class msModel hasInstance Individual BioTOF II Bruker Daltonics BioTOF II MS mzXMLOntology Class msModel hasInstance Individual BioTOF Q Bruker Daltonics BioTOF Q MS mzXMLOntology Class msModel hasInstance Individual microTOFLC Bruker Daltonics microTOFLC MS mzXMLOntology Class msModel hasInstance Individual TEMPUS TOF ThermoFinnigan TEMPUS TOF MS mzXMLOntology Class msModel hasInstance Individual ELEMENT2 ThermoFinnigan ELEMENT2 MS mzXMLOntology Class msModel hasInstance Individual Neptune ThermoFinnigan NEPTUNE MS mzXMLOntology Class msModel hasInstance Individual TRACE DSQ ThermoFinnigan TRACE DSQ MS mzXMLOntology Class msModel hasInstance Individual Surveyor MSQ ThermoFinnigan Surveyor MSQ MS mzXMLOntology Class msModel hasInstance Individual TSQ QUANTUM ThermoFinnigan TSQ QUANTUM MS mzXMLOntology Class msModel hasInstance Individual LCQ Classic ThermoFinnigan LCQ Classic MS mzXMLOntology Class msModel hasInstance Individual LCQ Deca XP Plus ThermoFinnigan LCQ Deca XP Plus MS mzXMLOntology Class msModel hasInstance Individual LCQ Advantage ThermoFinnigan LCQ Advantage MS mzXMLOntology Class msModel hasInstance Individual PolarisQ ThermoFinnigan PolarisQ MS mzXMLOntology Class msModel hasInstance Individual DELTAplusAdvantage ThermoFinnigan DELTAplusAdvantage MS mzXMLOntology Class msModel hasInstance Individual DELTAplusXP ThermoFinnigan DELTAplusXP MS mzXMLOntology Class msModel hasInstance Individual MAT253 ThermoFinnigan MAT253 MS mzXMLOntology Class msModel hasInstance Individual MAT900XP ThermoFinnigan MAT900XP MS mzXMLOntology Class msModel hasInstance Individual MAT900XP Trap ThermoFinnigan MAT900XP Trap MS mzXMLOntology Class msModel hasInstance Individual MAT95XP ThermoFinnigan MAT95XP MS mzXMLOntology Class msModel hasInstance Individual MAT95XP Trap ThermoFinnigan MAT95XP Trap MS mzXMLOntology Class msModel hasInstance Individual TRITON ThermoFinnigan TRITON MS mzXMLOntology Class msModel hasInstance Individual Q-Tof micro Waters Q-Tof micro MS mzXMLOntology Class msModel hasInstance Individual Quattro micro Waters Quattro micro MS mzXMLOntology Class msModel hasInstance Individual Quattro UItima Waters Quattro Uitima MS mzXMLOntology Class msModel hasInstance Individual GCT Waters GCT MS mzXMLOntology Class msModel hasInstance Individual AutoSpec Ultima NT Waters AutoSpec Ultima NT MS mzXMLOntology Class msModel hasInstance Individual M@LDI L Waters M@LDI L MS mzXMLOntology Class msModel hasInstance Individual M@LDI LR Waters M@LDI LR MS mzXMLOntology Class msModel hasInstance Individual Q-Tof Ultima Waters Q-Tof Ultima MS mzXMLOntology Class msModel hasInstance Individual IsoPrime Waters IsoPrime MS mzXMLOntology Class msModel hasInstance Individual IsoProbe Waters IsoProbe MS mzXMLOntology Class msModel hasInstance Individual IsoProbe T Waters IsoProbe T MS mzXMLOntology Class msModel hasInstance Individual Platform ICP Waters Platform ICP MS mzXMLOntology Class msModel hasInstance Individual NG-5400 Waters NG-5400 MS mzXMLOntology Class msModel hasInstance Individual API 150EX Applied Biosystems/MDS SCIEX API 150EX MS mzXMLOntology Class msModel hasInstance Individual API 150EX Prep Applied Biosystems/MDS SCIEX API 150EX Prep MS mzXMLOntology Class msModel hasInstance Individual API 2000 Applied Biosystems/MDS SCIEX API 2000 MS mzXMLOntology Class msModel hasInstance Individual API 3000 Applied Biosystems/MDS SCIEX API 3000 MS mzXMLOntology Class msModel hasInstance Individual API 4000 Applied Biosystems/MDS SCIEX API 4000 MS mzXMLOntology Class msModel hasInstance Individual Proteomics Solution 1 Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS mzXMLOntology Class msModel hasInstance Individual Q TRAP Applied Biosystems/MDS SCIEX Q TRAP MS mzXMLOntology Class msModel hasInstance Individual 4000 Q TRAP Applied Biosystems/MDS SCIEX Q 4000 TRAP MS mzXMLOntology Class msModel hasInstance Individual QSTAR Applied Biosystems/MDS SCIEX QSTAR MS mzXMLOntology Class msModel hasInstance Individual 4700 Proteomic Analyzer Applied Biosystems/MDS SCIEX 4700 Proteomic Analyzer MS mzXMLOntology Class msModel hasInstance Individual SymBiot I Applied Biosystems/MDS SCIEX SymBiot I MS mzXMLOntology Class msModel hasInstance Individual SymBiot XVI Applied Biosystems/MDS SCIEX SymBiot XVI MS mzXMLOntology Class msModel hasInstance Individual Voyager-DE PRO Applied Biosystems/MDS SCIEX Voyager-DE PRO MS mzXMLOntology Class msModel hasInstance Individual Voyager-DE STR Applied Biosystems/MDS SCIEX Voyager-DE STR MS mzXMLOntology Class msModel hasInstance Individual HiResMALDI IonSpec HiResMALDI MS mzXMLOntology Class msModel hasInstance Individual HiResESI IonSpec HiResESI MS mzXMLOntology Class msModel hasInstance Individual Ultima IonSpec Ultima MS mzXMLOntology Class msModel hasInstance Individual Explorer IonSpec Explorer MS mzXMLOntology Class msModel hasInstance Individual OMEGA IonSpec OMEGA MS mzXMLOntology Class msModel hasInstance Individual OMEGA-2001 IonSpec OMEGA-2001 MS mzXMLOntology Class msInstrument hasClass Class msIonization Type of ionization mechanism the mass spectrometer uses to produce free flying charged peptides for measurement mzXMLOntology Class msIonization hasInstance Individual ESI Electrospray Ionization. Sample droplets are sprayed from a thin needle. The ions in the droplets are desolvated with heat and gas flows. mzXMLOntology Class msIonization hasInstance Individual MALDI "Matrix Assisted Laser Desorption Ionization. A chromophore containing matrix absorbs energy from a laser beam, resulting in the vaporization and ionization of the analyte." mzXMLOntology Class msIonization hasInstance Individual EI Electron Impact Ionization. Electrons are removed from the analyte molecules by an electron beam passing through the gas phase sample. mzXMLOntology Class msIonization hasInstance Individual CI Chemical Ionization. A chemical reagent is reacted with the analyte molecules to form ions. mzXMLOntology Class msIonization hasInstance Individual FAB Fast Atom Bombardment. Analyte is extracted from a liquid solution by bombardment with a fast atom beam. mzXMLOntology Class msIonization hasInstance Individual APCI "Atmospheric Pressure Ionization. Similar to ESI, but plasma is created at the end of the heated capillary by a corona discharge." mzXMLOntology Class msInstrument hasClass Class msMassAnalyzer Type of mechanism the mass spectrometer uses to measure the mass-to-charge ratio for peptides mzXMLOntology Class msMassAnalyzer hasInstance Individual TOF Time of flight mass analyzer measures the time it takes ions of different masses to flight from the ion source to the detector. mzXMLOntology Class msMassAnalyzer hasInstance Individual Quadrupole Quadrupole mass analyzer measures the mass-to-charge ratio by combining DC and RF potentials on the quadrupole rods to let only ions of a selected mass-to-charge ratio pass. mzXMLOntology Class msMassAnalyzer hasInstance Individual Quadrupole Ion Trap Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials. mzXMLOntology Class msMassAnalyzer hasInstance Individual FT-ICR Fourier Transform Ion Cyclotron Resonance mass analyzer measure the cyclotron frequency of an ion to determine its mass. mzXMLOntology Class msMassAnalyzer hasInstance Individual Magnetic Sector Magnetic Sector mass analyzer measures the mass-to-charge of the ions by bending their trajectory using a magnetic field. mzXMLOntology Class msInstrument hasClass Class msDetector Type of mechanism the mass spectrometer uses to measure the mass-to-charge ratio for peptides mzXMLOntology Class msDetector hasInstance Individual Channeltron "Channeltron type detector. Horn-shaped dynode coated with electron emissive material that creates, when struck by an ion, an avalanche of secondary electrons and finally an current pulse." mzXMLOntology Class msDetector hasInstance Individual Daly "Daly detector. Electrons created by a metal knob struck by an ion are accelerated onto a scintillator, whose light is detected by a photomultiplier." mzXMLOntology Class msDetector hasInstance Individual EMT Electron Multiplier Tube. A series of biased dynodes ejects secondary electrons when struck by an ion. mzXMLOntology Class msDetector hasInstance Individual Faraday Cup Faraday Cup type detector. An electrometer attached to a metal cup in the path of the ions detects the ion-beam current. mzXMLOntology Class msDetector hasInstance Individual Microchannel plate "Microchannel plate type detector. Array of glass capillaries coated with electron emissive material that creates, when struck by an ion, an avalanche of secondary electrons and finally an current pulse." mzXMLOntology Root mzXMLOntology hasClass Class plate A plate onto which peptides are spotted in a matrix for later analysis with a MALDI mass spectrometer mzXMLOntology Class plate hasClass Class plateManufacturer Name of the manufacturer of the plate mzXMLOntology Class plateManufacturer hasInstance Individual ABI / SCIEX Applied Biosystems/MDS SCIEX Joint Venture mzXMLOntology Class plateManufacturer hasInstance Individual Bruker Daltonics Bruker Daltonics mzXMLOntology Class plateManufacturer hasInstance Individual PerkinElmer PerkinElmer inc. mzXMLOntology Class plateManufacturer hasInstance Individual Waters Waters Corporation mzXMLOntology Class plate hasClass Class plateModel Model Name of the plate mzXMLOntology Class plateModel hasInstance Individual Scout MTP Bruker Daltonics Scout MTP MALDI target plate mzXMLOntology Class plateModel hasInstance Individual AnchorChip Bruker Daltonics AnchorChip MALDI target plate mzXMLOntology Class plateModel hasInstance Individual MALDIchip PerkinElmer MALDIchip MALDI target plate mzXMLOntology Class plateModel hasInstance Individual LC-MALDIprep Waters LC-MALDIprep MALDI target plate mzXMLOntology Class plateModel hasInstance Individual MassPREP DIOS-targets Waters MassPREP DIOS-targets MALDI target plate mzXMLOntology Class plateModel hasInstance Individual PerSeptive definition ? mzXMLOntology Class plate hasClass Class pattern Model Name of the plate mzXMLOntology Class pattern hasClass Class spottingPattern Pattern in which the spots of peptide matrix are deposited on the plate mzXMLOntology Class spottingPattern hasInstance Individual parallel spotting directions between two consecutive rows are parallel mzXMLOntology Class spottingPattern hasInstance Individual antiparallel spotting directions between two consecutive rows are antiparallel mzXMLOntology Root mzXMLOntology hasClass Class spot A deposit of analytes crystalized in matrix onto a plate mzXMLOntology Class spot hasClass Class maldiMatrix Chemical used to cristalyze analytes in a spot mzXMLOntology Class maldiMatrix hasInstance Individual sinapinic acid Sinapinic acid matrix mzXMLOntology Class maldiMatrix hasInstance Individual alphaCHCA 4-hydroxycinnamic acid matrix mzXMLOntology Class maldiMatrix hasInstance Individual "2,5-DHB" "2,5-dihydroxybenzoic acid matrix" mzXMLOntology Class maldiMatrix hasInstance Individual sDHB "Mixture of 2,5-dihydroxybenzoic acid and 5-methoxysalicyclic acid matrix" mzXMLOntology Class maldiMatrix hasInstance Individual HABA 2-(4-hydroxy-phenylazo)-benzoic acid matrix mzXMLOntology Class maldiMatrix hasInstance Individual 3-HPA 3-hydroxypicolinic acid matrix mzXMLOntology Class maldiMatrix hasInstance Individual Dithranol Dithranol matrix mzXMLOntology Class maldiMatrix hasInstance Individual THAP "2,4,6 trihydroxy acetophenone matrix" mzXMLOntology Class maldiMatrix hasInstance Individual IAA trans-3-indoleacrylic acid matrix mzXMLOntology Class maldiMatrix hasInstance Individual Picolinic acid Picolinic acid matrix mzXMLOntology Class maldiMatrix hasInstance Individual Nicotinic acid Nicotinic acid matrix mzXMLOntology Root mzXMLOntology hasClass Class robot A machine designed to spot a sample matrix mixture on a MALDI target plate mzXMLOntology Class robot hasClass Class robotManufacturer The name of the manufacturer of the robot mzXMLOntology Class robotManufacturer hasInstance Individual Bruker Daltonics Bruker Daltonics mzXMLOntology Class robotManufacturer hasInstance Individual Proteome Systems Proteome Systems Ltd. mzXMLOntology Class robotManufacturer hasInstance Individual Shimadzu Biotech Shimadzu corporation mzXMLOntology Class robotManufacturer hasInstance Individual Tecan Tecan mzXMLOntology Class robotManufacturer hasInstance Individual Waters Waters Corporation mzXMLOntology Class robot hasClass Class robotModel The name of the model of the robot mzXMLOntology Class robotModel hasInstance Individual Map II Bruker Daltonics Map II MALDI AutoPrep robot System mzXMLOntology Class robotModel hasInstance Individual MapII / 8 Bruker Daltonics MapII / 8 MALDI AutoPrep robot System mzXMLOntology Class robotModel hasInstance Individual Map II / pure Bruker Daltonics Map II/pure Workstation for Magnetic Bead Purification robot mzXMLOntology Class robotModel hasInstance Individual PROTEINEER dp Bruker Daltonics PROTEINEER dp Digest and Prep Workstation mzXMLOntology Class robotModel hasInstance Individual Xcise Proteome Systems Xcise robot System mzXMLOntology Class robotModel hasInstance Individual AccuSpot Shimadzu Biotech AccuSpot robot System mzXMLOntology Class robotModel hasInstance Individual Xcise In Gel Digest robot Shimadzu Xcise In Gel Digest robot mzXMLOntology Class robotModel hasInstance Individual ProTeam Digest System Tecan Proteam Digest System mzXMLOntology Class robotModel hasInstance Individual MassPREP Waters MassPREP Station