# RCSid:  $Revision$   $Date$
#-------------------------------------------------------------------------------
# remove useless node attributes
nodeAttributeCategories.invisibleToBrowser=ignore
#----------------------------------- plugins
plugin.expProfView.load=csplugins.expressionData.ExpressionProfileViewer
plugin.expCorView.load=csplugins.expressionData.ExpressionCorrelationViewer
plugin.dynamicXpr.load=csplugins.dynamicXpr.DynamicXprPlugIn
plugin.seq.load=csplugins.isb.dreiss.sequence.SequencePlugin
plugin.hom.load=csplugins.isb.dreiss.sequence.HomologPlugin
plugin.syn.load=csplugins.isb.dreiss.sequence.SynonymPlugin
plugin.int.load=csplugins.isb.dreiss.getInteractions.GetInteractions
plugin.layout.load=csplugins.trial.pshannon.Y2Layouters
plugin.ser.load=csplugins.serializable.CytoscapeSerializePlugIn
plugin.cyto.load=csplugins.isb.dreiss.cytoTalk.CytoTalkPlugin

plugin.visClust.load=csplugins.isb.dreiss.visualClustering.VisualClusteringPlugin
plugin.dataCube.load=csplugins.trial.pshannon.dataCube.DataCubePlugin

#plugin.activeMod.load=csplugins.jActiveModules.ActiveModulesUI
#plugin.expRand.load=csplugins.jActiveModules.ExpressionRandomizer
#plugin.subnetExpand.load=csplugins.jActiveModules.SubnetworkExpander
#plugin.biomod.load=csplugins.biomodules.BiomodulesPlugIn

plugin.projectio.load=csplugins.trial.pshannon.projectIO.ProjectIOPlugin
plugin.keggover.load=csplugins.trial.pshannon.keggOverlay.KeggOverlayPlugin
#plugin.refnet.load=csplugins.homology.ReferenceNetworkPlugin

# ----------------------------- motif finder plugin 
plugin.motif.load = csplugins.isb.dreiss.motifFinder.MotifFinderPlugin
plugin.motifFinder.class = djr.motif.sampler.MultiSampler
plugin.motifFinder.args.dna = -W 9 -i1 50 -min 0 -max 3 -quiet -thread -N 2 -bgo 3
plugin.motifFinder.args.protein = -W 9 -i1 50 -min 0 -max 3 -quiet -thread -N 2 -fg dirichlet -dirich dirichlet/hydro-cons.3comp

#----------------------------------- vizmapper
visualStyle=UESC