table_name	column_index	column_name	column_title	datatype	scale	precision	nullable	default_value	is_auto_inc	fk_table	fk_column_name	is_required	input_type	input_length	onChange	is_data_column	is_display_column	is_key_field	column_text	optionlist_query	url
ModTmpTAG_biosequence_set	1	biosequence_set_id	BioSequence Set ID	int	4	0	N		Y							N	N				pkDEFAULT
ModTmpTAG_biosequence_set	2	project_id	Owner Project	int	4	0	N		N	project	project_id	Y	optionlist			Y	Y	N	Project under which this Biosequence Set is organized and for which user privileges is controlled	SELECT DISTINCT P.project_id,UL.username+' - '+P.name FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' AND P.project_id IN ( $accessible_project_ids ) ORDER BY UL.username+' - '+P.name,P.project_id	
ModTmpTAG_biosequence_set	3	organism_id	Organism	int	4	0	N		N	organism	organism_id	Y	optionlist			Y	Y	N	Organism to which the BioSequences in this database belong	SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name	
ModTmpTAG_biosequence_set	4	set_name	Set Name	varchar	100	0	N		N			Y	text	50		Y	Y	N	Name of this BioSequence database		
ModTmpTAG_biosequence_set	5	set_tag	Set Tag	varchar	50	0	N		N			Y	text	20		Y	Y	Y	Short tag (name) of this BioSequence database		
ModTmpTAG_biosequence_set	6	set_description	Set Description	varchar	255	0	N		N			Y	text	50		Y	Y	N	Longer description of this BioSequence database		
ModTmpTAG_biosequence_set	7	set_version	Set Version	varchar	50	0	N		N			Y	text	40		Y	Y	N	Version of this BioSequence database		
ModTmpTAG_biosequence_set	8	polymer_type_id	Polymer Type	int	4	0	N		N	BL_polymer_type	polymer_type_id	Y	optionlist			Y	Y	N	Polymer type (e.g. protein, DNA, RNA) for the BioSequences in this database	SELECT polymer_type_id, polymer_type_name FROM $TBBL_POLYMER_TYPE ORDER BY sort_order,polymer_type_name	
ModTmpTAG_biosequence_set	9	upload_file	Upload file	varchar	255	0	Y		N			N	file	40		Y	Y	N	File path of this BioSequence database if to be uploaded via the web interface		
ModTmpTAG_biosequence_set	10	set_path	Set Path	varchar	255	0	N		N			Y	text	50		Y	Y	N	File path of this BioSequence database		
ModTmpTAG_biosequence_set	11	source_file_date	Source File Date	datetime	8	0	Y		N			N	text	40		N	N	N	Date of the FASTA file at last update		
ModTmpTAG_biosequence_set	12	uri	URI	varchar	255	0	Y		N			N	text	50		Y	Y	N	External web page or other URI		SELF
ModTmpTAG_biosequence_set	13	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
ModTmpTAG_biosequence_set	14	sort_order	Sort Order	int	4	0	N	10	N			N	text	20		Y	Y	N	Allows the ordering or ranking of Biosequence Sets which is used to break ties for choosing canonical names.  Lower numbers indicate better rank.		
ModTmpTAG_biosequence_set	15	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
ModTmpTAG_biosequence_set	16	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
ModTmpTAG_biosequence_set	17	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
ModTmpTAG_biosequence_set	18	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
ModTmpTAG_biosequence_set	19	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
ModTmpTAG_biosequence_set	20	record_status	Record Status	char	1	0	N	N	N							N	N				
ModTmpTAG_dbxref	1	dbxref_id	dbxref ID	int	4	0	N		Y							N	N				pkDEFAULT
ModTmpTAG_dbxref	2	dbxref_name	CrossRef Name	varchar	50	0	N		N			Y	text	40		Y	Y	N	Name of this Database Cross Reference		
ModTmpTAG_dbxref	3	dbxref_tag	CrossRef Tag	varchar	20	0	N		N			Y	text	20		Y	Y	Y	Short tag (name) of this Database Cross Reference		
ModTmpTAG_dbxref	4	dbxref_description	Description	varchar	255	0	N		N			Y	text	50		Y	Y	N	Longer description of this Database Cross Reference		
ModTmpTAG_dbxref	5	accessor	Accessor	varchar	255	0	N		N			Y	text	50		Y	Y	N	Part of a URL or URI to which an accession number can be appended to get more information about the entity using this cross reference		
ModTmpTAG_dbxref	6	accessor_suffix	Accessor Suffix	varchar	255	0	Y		N			N	text	50		Y	Y	N	Part of a URL or URI which comes after the accession number to build the full URL to get more information about the entity using this cross reference		
ModTmpTAG_dbxref	7	uri	URI	varchar	255	0	N		N			Y	text	50		Y	Y	N	External web page or other URI of the database		SELF
ModTmpTAG_dbxref	8	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
ModTmpTAG_dbxref	9	sort_order	Sort Order	int	4	0	N	10	N							N	N	N			
ModTmpTAG_dbxref	10	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
ModTmpTAG_dbxref	11	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
ModTmpTAG_dbxref	12	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
ModTmpTAG_dbxref	13	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
ModTmpTAG_dbxref	14	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
ModTmpTAG_dbxref	15	record_status	Record Status	char	1	0	N	N	N							N	N				
ModTmpTAG_biosequence	1	biosequence_id	BioSequence ID	int	4	0	N		Y							N	N				pkDEFAULT
ModTmpTAG_biosequence	2	biosequence_set_id	BioSequence Set	int	4	0	N		N	ModTmpTAG_biosequence_set	biosequence_set_id					N	N	Y	BioSequence Set to which this BioSequence belongs		pkDEFAULT
ModTmpTAG_biosequence	3	biosequence_name	BioSequence Name	varchar	255	0	N		N			Y	text	50		Y	Y	Y	Name of this BioSequence (generally everything before the first space in a FASTA file header line)		
ModTmpTAG_biosequence	4	biosequence_gene_name	BioSequence Gene Name	varchar	255	0	Y		N			Y	text	20		Y	Y	N	Gene name of this BioSequence if applicable.  Most common gene name if applicable		
ModTmpTAG_biosequence	5	dbxref_id	Database Cross Reference	int	4	0	Y		N	ModTmpTAG_dbxref	dbxref_id					Y	Y	N	Database cross reference for which the accession number applies		pkDEFAULT
ModTmpTAG_biosequence	6	biosequence_accession	BioSequence Accession	varchar	255	0	Y		N			Y	text	50		Y	Y	N	Accession number for this BioSequence in some external database designated above		
ModTmpTAG_biosequence	7	biosequence_desc	Biosequence Description	varchar	1024	0	N		N			Y	text	40		Y	Y	N	Description of this BioSequence (generally everything after the first space in a FASTA file header line)		
ModTmpTAG_biosequence	8	biosequence_seq	Sequence	text	16	0	Y		N			N	file	40		Y	Y	N	Actual sequence of the BioSequence if known		
ModTmpTAG_biosequence_property_set	1	biosequence_property_set_id	BioSequence Property Set ID	int	4	0	N		Y							N	N				pkDEFAULT
ModTmpTAG_biosequence_property_set	2	biosequence_id	BioSequence ID	int	4	0	N		N	ModTmpTAG_biosequence	biosequence_id					N	N	Y	Biosequence to which this Biosequence property set belongs		pkDEFAULT
ModTmpTAG_biosequence_property_set	3	n_transmembrane_regions	Number of Transmembrane Regions	int	4	0	Y		N							Y	Y	N	Number of transmembrane regions		pkDEFAULT
ModTmpTAG_biosequence_property_set	4	transmembrane_class	Transmembrane Region Class	varchar	10	0	Y		N			Y	text	50		Y	Y	N	"Class of the transmembrane region.  May be 0, TM, A, S, TM_xS based on output from TMHMM and signalP"		
ModTmpTAG_biosequence_property_set	5	transmembrane_topology	Transmembrane Region Topology	varchar	1024	0	Y		N			Y	text	20		Y	Y	N	Coding of which residues belong in the transmembrane regions		
ModTmpTAG_biosequence_property_set	6	has_signal_peptide	Has a Signal Peptide	char	1	0	Y		N			N	text	50		Y	Y	N	"Does this protein have a signal peptide on the end Y/N? (Note that Y means that there is some non-zero probability that it does, not that is necessarily does)"		
ModTmpTAG_biosequence_property_set	7	has_signal_peptide_probability	Probability that it has a Signal Peptide	real	4	0	Y		N			N	text	50		Y	Y	N	Probability that there is a signal peptide on the end as calculated by SignalP		
ModTmpTAG_biosequence_property_set	8	signal_peptide_length	Length of the Signal Peptide	int	4	0	Y		N			N	text	50		Y	Y	N	Length in residues of the signal peptide		
ModTmpTAG_biosequence_property_set	9	signal_peptide_is_cleaved	Signal Peptide gets Cleaved	char	1	0	Y		N			N	text	50		Y	Y	N	Does the signal peptide get cleaved off Y/N?		
ModTmpTAG_biosequence_property_set	10	genome_build	Genome Build	varchar	50	0	Y		N			N	text	50		Y	Y	N	Genome build name for which the following mapping parameters are valid		
ModTmpTAG_biosequence_property_set	11	chromosome	Chromosome	varchar	50	0	Y		N			N	text	50		Y	Y	N	Chromosome in which this mapping occurs		
ModTmpTAG_biosequence_property_set	12	start_in_chromosome	Start Position in Chromosome	int	4	0	Y		N			N	text	20		Y	Y	N	Start position of the biosequence in the chromosome		
ModTmpTAG_biosequence_property_set	13	end_in_chromosome	End Position in Chromosome	int	4	0	Y		N			N	text	20		Y	Y	N	End position of the biosequence in the chromosome		
ModTmpTAG_biosequence_property_set	14	strand	Strand	char	1	0	Y		N			N	text	10		Y	Y	N	"Strand (+,-) of the biosequence in the chromosome"		
ModTmpTAG_biosequence_property_set	15	isoelectric_point	Isoelectric Point	real	4	0	Y		N			N	text	10		Y	Y	N	Isoelectric Point (pI) of the protein		
ModTmpTAG_biosequence_property_set	16	fav_codon_frequency	Favorite Codon Frequency	real	4	0	Y		N			N	text	10		Y	Y	N	Favorite Codon Frequency		
ModTmpTAG_biosequence_property_set	17	duplicate_biosequences	Duplicate Biosequences	varchar	255	0	Y		N			N	text	50		Y	Y	N	Semicolon delimited list of duplicate sequences within the same set		
ModTmpTAG_biosequence_property_set	18	category	Category	varchar	255	0	Y		N			N	text	50		Y	Y	N	Biosequence category		
ModTmpTAG_query_option	1	query_option_id	Query Option ID	int	4	0	N		Y							N	N				pkDEFAULT
ModTmpTAG_query_option	2	option_type	Option Type	varchar	255	0	N		N			Y	text	50		Y	Y	Y	Type or category of this option		
ModTmpTAG_query_option	3	option_key	Option Key	varchar	255	0	N		N			Y	text	50		Y	Y	Y	Key for this key/value pair option		
ModTmpTAG_query_option	4	option_value	Option Value	varchar	255	0	Y		N			Y	text	50		Y	Y	N	Value of this key/value pair option		
ModTmpTAG_query_option	5	sort_order	Sort Order	int	4	0	N	10	N			N	text	10		Y	Y	N	Numbers which override alphabetical sorting in a list box		
ModTmpTAG_query_option	6	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
ModTmpTAG_query_option	7	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
ModTmpTAG_query_option	8	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
ModTmpTAG_query_option	9	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
ModTmpTAG_query_option	10	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
ModTmpTAG_query_option	11	record_status	Record Status	char	1	0	N	N	N							N	N				
ModTmpTAG_BrowseBioSequence	1	biosequence_set_id	BioSequence Sets									N	multioptionlist	4		Y	Y	N	"Select desired BioSequence Sets to include in query.  Multiple items may be selected.  If no items are selected, ALL sets are searched."	"SELECT biosequence_set_id,set_name FROM $TBModTmpTAG_BIOSEQUENCE_SET ORDER BY sort_order,set_name"	
ModTmpTAG_BrowseBioSequence	2	biosequence_name_constraint	Name Constraint									N	text	40		Y	Y	N	Constraint for the BioSequence Name. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
ModTmpTAG_BrowseBioSequence	3	biosequence_gene_name_constraint	Gene Name Constraint									N	text	40		Y	Y	N	Constraint for the BioSequence Gene Name. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
ModTmpTAG_BrowseBioSequence	4	molecular_function_constraint	Molecular Function Constraint									N	text	40		Y	Y	N	Constraint for the GO Molecular Function. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
ModTmpTAG_BrowseBioSequence	5	biological_process_constraint	Biological Process Constraint									N	text	40		Y	Y	N	Constraint for the GO Biological Process. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
ModTmpTAG_BrowseBioSequence	6	cellular_component_constraint	Cellular Component Constraint									N	text	40		Y	Y	N	Constraint for the GO Cellular Component. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
ModTmpTAG_BrowseBioSequence	7	protein_domain_constraint	Protein Domain Constraint									N	text	40		Y	Y	N	Constraint for the InterPro Protein Domain. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
ModTmpTAG_BrowseBioSequence	8	fav_codon_frequency_constraint	Favored Codon Frequency Constraint									N	text	40		Y	Y	N	"Constraint for the favored codon frequency (calculation by Patrick Pedrioli).  Allowed syntax: ""n.n"", ""> n.n"", ""< n.n"", ""between n.n and n.n"", ""n.n +- n.n"""		
ModTmpTAG_BrowseBioSequence	9	n_transmembrane_regions_constraint	Number of Transmembrane Regions Constraint									N	text	40		Y	Y	N	"Constraint for the number of transmembrane regions (based on a 19-residue wide sliding window of hydropathy indexes above 1.58).  Allowed syntax: ""n"", ""> n"", ""< n"", ""between n and n"", ""n +- n"""		
ModTmpTAG_BrowseBioSequence	10	biosequence_seq_constraint	Sequence Constraint									N	text	40		Y	Y	N	Constraint for the actual sequence. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
ModTmpTAG_BrowseBioSequence	11	biosequence_desc_constraint	Description Constraint									N	text	40		Y	Y	N	Constraint for the BioSequence Description. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
ModTmpTAG_BrowseBioSequence	12	sort_order	Sort Order									N	optionlist	 		Y	Y	N	Desired display sorting order (DESC means descending: highest to lowest)	"SELECT option_key,option_value FROM $TBModTmpTAG_QUERY_OPTION WHERE option_type = 'BBS_sort_options' ORDER BY sort_order,option_value"	
ModTmpTAG_BrowseBioSequence	13	display_options	Display Options									N	multioptionlist	3		Y	Y	N	Various selectable table display options	"SELECT option_key,option_value FROM $TBModTmpTAG_QUERY_OPTION WHERE option_type = 'BBS_display_options' ORDER BY sort_order,option_value"	
ModTmpTAG_BrowseBioSequence	14	row_limit	Maximum Rows									N	text	10		Y	Y	N	"Limit the numbers of rows displayed.  If not provided, default is 100 rows."