table_name column_index column_name column_title datatype scale precision nullable default_value is_auto_inc fk_table fk_column_name is_required input_type input_length onChange is_data_column is_display_column is_key_field column_text optionlist_query url IN_biosequence_set 1 biosequence_set_id BioSequence Set ID int 4 0 N Y N N pkDEFAULT IN_biosequence_set 2 project_id Owner Project int 4 0 N N project project_id Y optionlist Y Y N Project under which this Biosequence Set is organized and for which user privileges is controlled "SELECT DISTINCT P.project_id,UL.username+' - '+P.name FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' AND P.project_id IN ( $accessible_project_ids ) ORDER BY UL.username+' - '+P.name,P.project_id" IN_biosequence_set 3 organism_id Organism int 4 0 N N organism organism_id Y optionlist Y Y N Organism to which the BioSequences in this database belong "SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name" IN_biosequence_set 4 set_name Set Name varchar 100 0 N N Y text 50 Y Y N Name of this BioSequence database IN_biosequence_set 5 set_tag Set Tag varchar 50 0 N N Y text 20 Y Y Y Short tag (name) of this BioSequence database IN_biosequence_set 6 set_description Set Description varchar 255 0 N N Y text 50 Y Y N Longer description of this BioSequence database IN_biosequence_set 7 set_version Set Version varchar 50 0 N N Y text 40 Y Y N Version of this BioSequence database IN_biosequence_set 8 polymer_type_id Polymer Type int 4 0 N N BL_polymer_type polymer_type_id Y optionlist Y Y N "Polymer type (e.g. protein, DNA, RNA) for the BioSequences in this database" "SELECT polymer_type_id, polymer_type_name FROM $TBBL_POLYMER_TYPE ORDER BY sort_order,polymer_type_name" IN_biosequence_set 9 upload_file Upload file varchar 255 0 Y N N file 40 Y Y N File path of this BioSequence database if to be uploaded via the web interface IN_biosequence_set 10 set_path Set Path varchar 255 0 N N Y text 50 Y Y N File path of this BioSequence database IN_biosequence_set 11 source_file_date Source File Date datetime 8 0 Y N N text 40 N N N Date of the FASTA file at last update IN_biosequence_set 12 uri URI varchar 255 0 Y N N text 50 Y Y N External web page or other URI SELF IN_biosequence_set 13 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_biosequence_set 14 sort_order Sort Order int 4 0 N 10 N N text 20 Y Y N Allows the ordering or ranking of Biosequence Sets which is used to break ties for choosing canonical names. Lower numbers indicate better rank. IN_biosequence_set 15 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_biosequence_set 16 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_biosequence_set 17 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_biosequence_set 18 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_biosequence_set 19 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_biosequence_set 20 record_status Record Status char 1 0 N N N N N IN_dbxref 1 dbxref_id dbxref ID int 4 0 N Y N N pkDEFAULT IN_dbxref 2 dbxref_name CrossRef Name varchar 50 0 N N Y text 40 Y Y N Name of this Database Cross Reference IN_dbxref 3 dbxref_tag CrossRef Tag varchar 20 0 N N Y text 20 Y Y Y Short tag (name) of this Database Cross Reference IN_dbxref 4 dbxref_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this Database Cross Reference IN_dbxref 5 accessor Accessor varchar 255 0 N N Y text 50 Y Y N Part of a URL or URI to which an accession number can be appended to get more information about the entity using this cross reference IN_dbxref 6 accessor_suffix Accessor Suffix varchar 255 0 Y N N text 50 Y Y N Part of a URL or URI which comes after the accession number to build the full URL to get more information about the entity using this cross reference IN_dbxref 7 uri URI varchar 255 0 N N Y text 50 Y Y N External web page or other URI of the database SELF IN_dbxref 8 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_dbxref 9 sort_order Sort Order int 4 0 N 10 N N N N IN_dbxref 10 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_dbxref 11 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_dbxref 12 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_dbxref 13 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_dbxref 14 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_dbxref 15 record_status Record Status char 1 0 N N N N N IN_biosequence 1 biosequence_id BioSequence ID int 4 0 N Y N N pkDEFAULT IN_biosequence 2 biosequence_set_id BioSequence Set int 4 0 N N IN_biosequence_set biosequence_set_id N N Y BioSequence Set to which this BioSequence belongs pkDEFAULT IN_biosequence 3 biosequence_name BioSequence Name varchar 255 0 N N Y text 50 Y Y Y Name of this BioSequence (generally everything before the first space in a FASTA file header line) IN_biosequence 4 biosequence_gene_name BioSequence Gene Name varchar 255 0 Y N Y text 20 Y Y N Gene name of this BioSequence if applicable. Most common gene name if applicable IN_biosequence 5 dbxref_id Database Cross Reference int 4 0 Y N IN_dbxref dbxref_id Y Y N Database cross reference for which the accession number applies pkDEFAULT IN_biosequence 6 biosequence_accession BioSequence Accession varchar 255 0 Y N Y text 50 Y Y N Accession number for this BioSequence in some external database designated above IN_biosequence 7 biosequence_desc Biosequence Description varchar 1024 0 N N Y text 40 Y Y N Description of this BioSequence (generally everything after the first space in a FASTA file header line) IN_biosequence 8 biosequence_seq Sequence text 16 0 Y N N file 40 Y Y N Actual sequence of the BioSequence if known IN_query_option 1 query_option_id Query Option ID int 4 0 N Y N N pkDEFAULT IN_query_option 2 option_type Option Type varchar 255 0 N N Y text 50 Y Y Y Type or category of this option IN_query_option 3 option_key Option Key varchar 255 0 N N Y text 50 Y Y Y Key for this key/value pair option IN_query_option 4 option_value Option Value varchar 255 0 Y N Y text 50 Y Y N Value of this key/value pair option IN_query_option 5 sort_order Sort Order int 4 0 N 10 N N text 10 Y Y N Numbers which override alphabetical sorting in a list box IN_query_option 6 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_query_option 7 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_query_option 8 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_query_option 9 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_query_option 10 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_query_option 11 record_status Record Status char 1 0 N N N N N IN_publication_category 1 publication_category_id Publication Category ID int 4 0 N Y N N pkDEFAULT IN_publication_category 2 publication_category_name Publication Category Name varchar 100 0 N N Y text 40 Y Y Y Short name of this category as it will appear in list boxes IN_publication_category 3 publication_category_description Publication Category Description varchar 255 0 N N Y text 50 Y Y N More complete description of this publication category IN_publication_category 4 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_publication_category 5 sort_order Sort Order int 2 0 N 10 N N text 10 Y Y N Numbers which override alphabetical sorting in a list box IN_publication_category 6 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_publication_category 7 created_by_id Record Created By int 2 0 N 1 N contact contact_id N N IN_publication_category 8 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_publication_category 9 modified_by_id Record Modified By int 2 0 N 1 N contact contact_id N N IN_publication_category 10 owner_group_id Owner Group ID int 2 0 N 1 N work_group work_group_id N N IN_publication_category 11 record_status Record Status char 1 0 N N N N N IN_publication 1 publication_id Publication ID int 8 0 N Y N N pkDEFAULT IN_publication 2 pubmed_ID PubMed ID varchar 50 0 Y N Y text 30 refreshDocument() Y Y Y "PubMed ID for this publication. When this field is changed, the interface fetch the title,author,etc. information for you if the field below this (Publication Name) is empty" http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=%V&dopt=Abstract IN_publication 3 publication_name Publication Name varchar 100 0 N N Y text 50 Y Y Y "Friendly name of the citation, e.g. Dewey, Cheetham & Howe (1998)" IN_publication 4 keywords Keywords varchar 255 0 Y N N text 50 Y Y N A comma-separated list of keywords appropriate when searching for papers of this sort IN_publication 5 publication_category_id Publication Category int 4 0 Y N IN_publication_category publication_category_id N optionlist Y Y N Broad category within which this publication is classified "SELECT publication_category_id,publication_category_name FROM $TBIN_PUBLICATION_CATEGORY WHERE record_status != 'D' ORDER BY sort_order,publication_category_name" IN_publication 6 title Title varchar 255 0 Y N N textarea 2 Y Y N Title of the article IN_publication 7 author_list Author List varchar 255 0 Y N N textarea 2 Y Y N "Author list in 'Lastname, FIMI' format" IN_publication 8 journal_name Journal Name varchar 100 0 Y N N text 50 Y Y N Name of the Journal in which the article appears IN_publication 9 published_year Published Year varchar 10 0 Y N N text 20 Y Y N Year the article was published IN_publication 10 volume_number Volume Number varchar 50 0 Y N N text 20 Y Y N Volume number of the article IN_publication 11 issue_number Issue Number varchar 50 0 Y N N text 20 Y Y N Issue number of the article IN_publication 12 page_numbers Page Numbers varchar 50 0 Y N N text 30 Y Y N Page numbers of the article IN_publication 13 publisher_name Publisher Name varchar 255 0 Y N N text 40 Y Y N Name of the publisher IN_publication 14 editor_name Editor Name varchar 255 0 Y N N text 40 Y Y N "Name of the editor, if any" IN_publication 15 uri URI varchar 255 0 Y N N text 50 Y Y N "URL of other locator for the article, either out on the Internet or in the location Publications repository" SELF IN_publication 16 abstract Abstract text 16 0 Y N N textarea 4 Y Y N Plain text abstract of the article IN_publication 17 full_manuscript_file Manuscript File Upload varchar 255 0 Y N N file 40 Y Y N Actual file containing the manuscript (e.g. in PDF format) IN_publication 18 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_publication 19 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_publication 20 created_by_id Record Created By int 8 0 N N contact contact_id N N IN_publication 21 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_publication 22 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IN_publication 23 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IN_publication 24 record_status Record Status char 1 0 N N N N N IN_bioentity 1 bioentity_id BioEntity ID int 4 0 N Y N N pkDEFAULT IN_bioentity 2 organism_id Organism int 4 0 N N organism organism_id Y optionlist Y Y Y Organism for this BioEntity "SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name" IN_bioentity 3 bioentity_common_name BioEntity Common Name varchar 255 0 Y N N text 50 Y Y Y "Common name of this BioEntity. Often the gene symbol, eg. TLR2" IN_bioentity 4 bioentity_canonical_name BioEntity Canonical Name varchar 255 0 Y N N text 50 Y Y Y Canonical name of this BioEntity. This is the most offical ref. for this entitiy. Use of a RefSeq identifier is recommended (eg. NP_001203) IN_bioentity 5 bioentity_full_name BioEntity Full Name varchar 255 0 Y N N text 50 Y Y N Full name of this BioEntity (eg. Toll-like Receptor 2) IN_bioentity 6 bioentity_canonical_gene_name BioEntity Canonical GeneName varchar 255 0 Y N N text 50 Y N N Canonical GeneName of this BioEntity IN_bioentity 7 bioentity_aliases BioEntity Aliases varchar 255 0 Y N N textarea 2 Y Y N SemiColon seperated list of other Aliases for this BioEntity IN_bioentity 8 geneID GeneID int 4 0 Y N N text 15 Y Y Y GeneID of this BioEntity. (Formerly known as locusID) http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=retrieve&dopt=grahics&list_uids=%V IN_bioentity 9 bioentity_location BioEntity Location varchar 255 0 Y N N text 50 Y Y N Comma seperated list of locales where this BioEntity is found IN_bioentity 10 bioentity_member_ids BioEnitity Members varchar 255 0 Y N IN_bioentity_member bioentity_member_id N multilink Y Y N List of BioEntities known to be members of this BioEntity Complex "SELECT bioentity_id, bioentity_common_name + ' ' + ISNULL(BT.bioentity_type_name,'BioEntity Type?') + ' (' + ISNULL(O.organism_name,'Organism?') +')' AS ""bioentity_descriptor"" FROM $TBIN_BIOENTITY BE LEFT JOIN $TBIN_BIOENTITY_TYPE BT ON ( BE.bioentity_type_id = BT.bioentity_type_id ) LEFT JOIN $TB_ORGANISM O ON ( BE.organism_id = O.organism_id ) ORDER BY bioentity_common_name" IN_bioentity 11 bioentity_type_id BioEntity Type int 4 0 N N IN_bioentity_type bioentity_type_id Y optionlist Y Y Y Type of the BioEntity "SELECT bioentity_type_id, bioentity_type_name FROM $TBIN_BIOENTITY_TYPE ORDER BY sort_order,bioentity_type_name" IN_bioentity 12 biosequence_id BioSequence ID int 4 0 Y N IN_biosequence biosequence_id N optionlist N N N BioSequence identification "SELECT 1,2" IN_bioentity 13 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_bioentity 14 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity 15 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_bioentity 16 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity 17 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_bioentity 18 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_bioentity 19 record_status Record Status char 1 0 N N N N N IN_bioentity_type 1 bioentity_type_id BioEntity Type ID int 4 0 N Y N N pkDEFAULT IN_bioentity_type 2 bioentity_type_name BioEntity Type Name varchar 50 0 N N Y text 40 Y Y Y Name of this BioEntity Type IN_bioentity_type 3 bioentity_type_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this BioEntity Type IN_bioentity_type 4 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_bioentity_type 5 sort_order Sort Order int 4 0 N 10 N N N N Integer key by which these entities are usually sorted IN_bioentity_type 6 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity_type 7 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_bioentity_type 8 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity_type 9 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_bioentity_type 10 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_bioentity_type 11 record_status Record Status char 1 0 N N N N N IN_regulatory_feature 1 regulatory_feature_id Regulatory Feature ID int 4 0 N Y N N pkDEFAULT IN_regulatory_feature 2 bioentity_id Bioentity int 4 0 N N IN_bioentity bioentity_id Y optionlist Y Y N "SELECT bioentity_id, bioentity_common_name + ' ' + ISNULL(BT.bioentity_type_name,'BioEntity Type?') + ' (' + ISNULL(O.organism_name,'Organism?') +')' AS ""bioentity_descriptor"" FROM $TBIN_BIOENTITY BE LEFT JOIN $TBIN_BIOENTITY_TYPE BT ON ( BE.bioentity_type_id = BT.bioentity_type_id ) LEFT JOIN $TB_ORGANISM O ON ( BE.organism_id = O.organism_id ) ORDER BY bioentity_common_name" IN_regulatory_feature 3 regulatory_feature_type_id Regulatory Feature Type int 4 0 N N IN_regulatory_feature_type regulatory_feature_type_id Y optionlist Y Y N "SELECT regulatory_feature_type_id, regulatory_feature_type_name FROM $TBIN_REGULATORY_FEATURE_TYPE ORDER BY sort_order,regulatory_feature_type_name" IN_regulatory_feature 4 regulatory_feature_name Regulatory Feature Name varchar 255 0 N N Y text 40 Y Y Y Name of this Regulatory Feature IN_regulatory_feature 5 regulatory_feature_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this Regulatory Feature IN_regulatory_feature 6 assay_id Assay int 4 0 Y N IN_assay assay_id N optionlist Y Y N "SELECT assay_id, assay_name FROM $TBIN_ASSAY ORDER BY assay_name" IN_regulatory_feature 7 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_regulatory_feature 8 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_regulatory_feature 9 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_regulatory_feature 10 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_regulatory_feature 11 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_regulatory_feature 12 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_regulatory_feature 13 record_status Record Status char 1 0 N N N N N IN_regulatory_feature_type 1 regulatory_feature_type_id Regulatory Feature Type ID int 4 0 N Y N N pkDEFAULT IN_regulatory_feature_type 2 parent_regulatory_feature_type_id Parent Regulatory Feature Type int 4 0 Y N N optionlist Y Y N Optional Parent Type "SELECT regulatory_feature_type_id, regulatory_feature_type_name FROM $TBIN_REGULATORY_FEATURE_TYPE ORDER BY sort_order,regulatory_feature_type_name" IN_regulatory_feature_type 3 regulatory_feature_type_name Regulatory Feature Type Name varchar 255 0 N N Y text 40 Y Y Y Name of this Regulatory Feature Type IN_regulatory_feature_type 4 regulatory_feature_type_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this Regulatory Feature Type IN_regulatory_feature_type 5 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_regulatory_feature_type 6 sort_order Sort Order int 4 0 N 10 N Y Y N Integer key by which these entities are usually sorted IN_regulatory_feature_type 7 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_regulatory_feature_type 8 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_regulatory_feature_type 9 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_regulatory_feature_type 10 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_regulatory_feature_type 11 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_regulatory_feature_type 12 record_status Record Status char 1 0 N N N N N IN_interaction 1 interaction_id Interaction ID int 4 0 N Y N N N pkDEFAULT IN_interaction 2 interaction_group_id Interaction Group int 4 0 N N IN_interaction_group interaction_group_id Y optionlist Y Y Y Interaction Group under which this Interaction should be stored. Note that this classification is somewhat arbitrary and is mainly an organizational and querying aid. "SELECT interaction_group_id,UL.username+' - '+P.project_tag+' - '+O.organism_name+' - '+IG.interaction_group_name FROM $TBIN_INTERACTION_GROUP IG INNER JOIN $TB_PROJECT P ON ( IG.project_id = P.project_id ) INNER JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id = UL.contact_id ) INNER JOIN $TB_ORGANISM O ON ( IG.organism_id = O.organism_id ) WHERE IG.record_status!='D' ORDER BY UL.username,P.project_tag,O.organism_name,IG.interaction_group_name" IN_interaction 3 bioentity1_id BioEntity1 int 4 0 N N IN_bioentity bioentity_id Y optionlist Y Y Y Bioentity1 "SELECT bioentity_id, ISNULL(bioentity_common_name, 'CommonName?') + ' ' + '['+ ISNULL( BE.bioentity_canonical_name,'CanonicalName?') + '] '+ ISNULL(BT.bioentity_type_name,'BioEntity Type?') + ' (' + ISNULL(O.organism_name,'Organism?') +')' AS ""bioentity_descriptor"" FROM $TBIN_BIOENTITY BE LEFT JOIN $TBIN_BIOENTITY_TYPE BT ON ( BE.bioentity_type_id = BT.bioentity_type_id ) LEFT JOIN $TB_ORGANISM O ON ( BE.organism_id = O.organism_id ) WHERE BE.record_status!='D' ORDER BY bioentity_common_name" IN_interaction 4 bioentity1_state_id BioEntity1 State int 4 0 Y N IN_bioentity_state bioentity_state_id N optionlist Y Y Y The State of Bioentity1 "SELECT bioentity_state_id, bioentity_state_name FROM $TBIN_BIOENTITY_STATE WHERE record_status != 'D' ORDER BY bioentity_state_name" IN_interaction 5 while_member_of_bioentity1_id Member1 of a Complex int 4 0 Y N N optionlist Y Y Y Interacts with other bioentities when it is a member of a Complex "SELECT bioentity_id, ISNULL(bioentity_common_name, 'CommonName?') + ' ' + '['+ ISNULL( BE.bioentity_canonical_name,'CanonicalName?') + '] '+ ISNULL(BT.bioentity_type_name,'BioEntity Type?') + ' (' + ISNULL(O.organism_name,'Organism?') +')' AS ""bioentity_descriptor"" FROM $TBIN_BIOENTITY BE LEFT JOIN $TBIN_BIOENTITY_TYPE BT ON ( BE.bioentity_type_id = BT.bioentity_type_id ) LEFT JOIN $TB_ORGANISM O ON ( BE.organism_id = O.organism_id ) WHERE BE.record_status!='D' and BE.bioentity_type_id = 3 ORDER BY bioentity_common_name" https://db.systemsbiology.net/sbeams/cgi/Interactions/ManageTable.cgi?TABLE_NAME=IN_bioentity&bioentity_id=%V IN_interaction 6 regulatory_feature1_id Regulatory Feature of Bioentity1 int 4 0 Y N IN_regulatory_feature regulatory_feature_id N optionlist Y Y Y The Regulatory Feature of Bioentity1 "SELECT regulatory_feature_id, regulatory_feature_name FROM $TBIN_REGULATORY_FEATURE WHERE record_status != 'D' ORDER BY regulatory_feature_name" IN_interaction 7 interaction_type_id Interaction Type int 4 0 N N IN_interaction_type interaction_type_id Y optionlist Y Y N The Type of Interaction "SELECT interaction_type_id, interaction_type_name FROM $TBIN_INTERACTION_TYPE WHERE record_status != 'D' ORDER BY interaction_type_name" IN_interaction 8 bioentity2_id BioEntity2 int 4 0 N N IN_bioentity bioentity_id Y optionlist Y Y Y Bioentity2 "SELECT bioentity_id, ISNULL(bioentity_common_name, 'CommonName?') + ' ' + '['+ ISNULL( BE.bioentity_canonical_name,'CanonicalName?') + '] '+ ISNULL(BT.bioentity_type_name,'BioEntity Type?') + ' (' + ISNULL(O.organism_name,'Organism?') +')' AS ""bioentity_descriptor"" FROM $TBIN_BIOENTITY BE LEFT JOIN $TBIN_BIOENTITY_TYPE BT ON ( BE.bioentity_type_id = BT.bioentity_type_id ) LEFT JOIN $TB_ORGANISM O ON ( BE.organism_id = O.organism_id ) WHERE BE.record_status!='D' ORDER BY bioentity_common_name" IN_interaction 9 bioentity2_state_id BioEntity2 State int 4 0 Y N IN_bioentity_state bioentity_state_id N optionlist Y Y Y The State of Bioentity2 "SELECT bioentity_state_id, bioentity_state_name FROM $TBIN_BIOENTITY_STATE WHERE record_status != 'D' ORDER BY bioentity_state_name" IN_interaction 10 while_member_of_bioentity2_id Member2 of a Complex int 4 0 Y N N optionlist Y Y Y Interacts with other bioentities when it is a member of a Complex "SELECT bioentity_id, ISNULL(bioentity_common_name, 'CommonName?') + ' ' + '['+ ISNULL( BE.bioentity_canonical_name,'CanonicalName?') + '] '+ ISNULL(BT.bioentity_type_name,'BioEntity Type?') + ' (' + ISNULL(O.organism_name,'Organism?') +')' AS ""bioentity_descriptor"" FROM $TBIN_BIOENTITY BE LEFT JOIN $TBIN_BIOENTITY_TYPE BT ON ( BE.bioentity_type_id = BT.bioentity_type_id ) LEFT JOIN $TB_ORGANISM O ON ( BE.organism_id = O.organism_id ) WHERE BE.record_status!='D' and BE.bioentity_type_id = 3 ORDER BY bioentity_common_name" https://db.systemsbiology.net/sbeams/cgi/Interactions/ManageTable.cgi?TABLE_NAME=IN_bioentity&bioentity_id=%V IN_interaction 11 regulatory_feature2_id Regulatory Feature of Bioentity2 int 4 0 Y N IN_regulatory_feature regulatory_feature_id N optionlist Y Y Y The Regulatory Feature of Bioentity2 "SELECT regulatory_feature_id, regulatory_feature_name FROM $TBIN_REGULATORY_FEATURE WHERE record_status != 'D' ORDER BY regulatory_feature_name" IN_interaction 12 confidence_score_id Confidence Score for Interaction int 4 0 Y N IN_confidence_score confidence_score_id N optionlist Y Y N The Confidence Score for the Interaction "SELECT confidence_score_id, confidence_score_name FROM $TBIN_CONFIDENCE_SCORE WHERE record_status != 'D' ORDER BY sort_order,confidence_score_name" IN_interaction 13 interaction_name Interaction Name varchar 255 0 Y N N text 50 Y Y N An optional name of this Interaction IN_interaction 14 interaction_description Description of Interaction varchar 255 0 Y N N textarea 4 Y Y N An optional detailed description of this Interaction IN_interaction 15 assay_id Assay int 4 0 Y N IN_assay assay_id N optionlist Y Y Y The Assay from which the Interaction was Determined "SELECT assay_id, assay_name FROM $TBIN_ASSAY WHERE record_status != 'D' ORDER BY assay_name" IN_interaction 16 publication_id Publication int 4 0 Y N IN_publication publication_id N optionlist Y Y Y The Publication from which the Interaction was taken. NOTE: It is strongly recommened that the user defined an Assay and then link the Assay to the Publication instead of using this link. This allows specification of the Assay Type that was used to determine the interaction. "SELECT publication_id, publication_name+'(PMID '+pubmed_ID+')' FROM $TBIN_PUBLICATION WHERE record_status != 'D' ORDER BY publication_name" IN_interaction 17 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_interaction 18 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_interaction 19 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_interaction 20 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_interaction 21 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_interaction 22 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_interaction 23 record_status Record Status char 1 0 N N N N N IN_interaction_type 1 interaction_type_id Interaction Type ID int 4 0 N Y N N pkDEFAULT IN_interaction_type 2 parent_interaction_type_id Parent Interaction Type int 4 0 Y N IN_interaction_type interaction_type_id N optionlist Y Y N Optional Parent Type "SELECT interaction_type_id, interaction_type_name FROM $TBIN_INTERACTION_TYPE ORDER BY sort_order,interaction_type_name" IN_interaction_type 3 interaction_type_name Interaction Type Name varchar 255 0 N N Y text 40 Y Y Y Name of this Interaction Type IN_interaction_type 4 interaction_type_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this Interaction Type IN_interaction_type 5 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_interaction_type 6 sort_order Sort Order int 4 0 N 10 N N text 20 Y Y N Integer key by which these entities are usually sorted IN_interaction_type 7 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_interaction_type 8 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_interaction_type 9 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_interaction_type 10 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_interaction_type 11 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_interaction_type 12 record_status Record Status char 1 0 N N N N N IN_interaction_group 1 interaction_group_id Interaction Group ID int 4 0 N Y N N pkDEFAULT IN_interaction_group 2 project_id Project int 4 0 N N project project_id Y optionlist Y Y Y Project to which this Interaction Group belongs "SELECT project_id,username+' - '+name FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' ORDER BY username,name" IN_interaction_group 3 organism_id Organism int 4 0 N N organism organism_id Y optionlist Y Y Y Organism for this BioEntity "SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name" IN_interaction_group 4 interaction_group_name Interaction Group Name varchar 255 0 N N Y text 40 Y Y Y "Name of this Interaction Group. This is a broad-brush classification of interactions to aid querying. You may have two separate Interaction Groups of the same name as long as they belong to different Organisms; in fact, it is encouraged." IN_interaction_group 5 interaction_group_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this Interaction Group IN_interaction_group 6 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_interaction_group 7 sort_order Sort Order int 4 0 N 10 N N N N Integer key by which these entities are usually sorted IN_interaction_group 8 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_interaction_group 9 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_interaction_group 10 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_interaction_group 11 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_interaction_group 12 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_interaction_group 13 record_status Record Status char 1 0 N N N N N IN_bioentity_state 1 bioentity_state_id Bioentity State ID int 4 0 N Y N N pkDEFAULT IN_bioentity_state 2 bioentity_state_name Bioentity State Name varchar 255 0 N N Y text 40 Y Y Y Name of this Bioentity State IN_bioentity_state 3 bioentity_state_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this Bioentity State IN_bioentity_state 4 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_bioentity_state 5 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity_state 6 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_bioentity_state 7 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity_state 8 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_bioentity_state 9 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_bioentity_state 10 record_status Record Status char 1 0 N N N N N IN_confidence_score 1 confidence_score_id Interaction Type ID int 4 0 N Y N N pkDEFAULT IN_confidence_score 2 confidence_score_name Interaction Type Name varchar 255 0 N N Y text 40 Y Y Y Name of this Confidence Score IN_confidence_score 3 confidence_score_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this Confidence Score IN_confidence_score 4 confidence_score_value Value of Confidence Score real 4 0 N N Y text 10 Y Y N Decimal number between 0.0 and 1.0 similar to a probability of being correct IN_confidence_score 5 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_confidence_score 6 sort_order Sort Order int 4 0 N 10 N N text 10 Y Y N Integer key by which these entities are usually sorted IN_confidence_score 7 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_confidence_score 8 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_confidence_score 9 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_confidence_score 10 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_confidence_score 11 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_confidence_score 12 record_status Record Status char 1 0 N N N N N IN_assay_type 1 assay_type_id Assay Type ID int 4 0 N Y N N pkDEFAULT IN_assay_type 2 assay_type_name Assay Type Name varchar 255 0 N N Y text 40 Y Y Y Name of this Assay Type IN_assay_type 3 assay_type_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this Assay Type IN_assay_type 4 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_assay_type 5 sort_order Sort Order int 4 0 N 10 N N text 10 Y Y N Integer key by which these entities are usually sorted IN_assay_type 6 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_assay_type 7 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_assay_type 8 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_assay_type 9 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_assay_type 10 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_assay_type 11 record_status Record Status char 1 0 N N N N N IN_sample_type 1 sample_type_id Sample Type ID int 4 0 N Y N N pkDEFAULT IN_sample_type 2 sample_type_name Sample Type Name varchar 255 0 N N Y text 40 Y Y Y Name of this Sample Type IN_sample_type 3 sample_type_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this Sample Type IN_sample_type 4 organism_id Organism int 4 0 N N organism organism_id Y optionlist Y Y N Organism "SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name" IN_sample_type 5 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_sample_type 6 sort_order Sort Order int 4 0 N 10 N N text 10 Y Y N Integer key by which these entities are usually sorted IN_sample_type 7 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_sample_type 8 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_sample_type 9 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_sample_type 10 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_sample_type 11 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_sample_type 12 record_status Record Status char 1 0 N N N N N IN_bioentity_attribute 1 bioentity_attribute_id BioEntity Attribute ID int 4 0 N Y N N pkDEFAULT IN_bioentity_attribute 2 bioentity_id BioEntity int 4 0 N N IN_bioentity bioentity_id Y optionlist Y Y N "SELECT bioentity_id, bioentity_common_name + ' ' + ISNULL(BT.bioentity_type_name,'BioEntity Type?') + ' (' + ISNULL(O.organism_name,'Organism?') +')' AS ""bioentity_descriptor"" FROM $TBIN_BIOENTITY BE LEFT JOIN $TBIN_BIOENTITY_TYPE BT ON ( BE.bioentity_type_id = BT.bioentity_type_id ) LEFT JOIN $TB_ORGANISM O ON ( BE.organism_id = O.organism_id ) ORDER BY bioentity_common_name" IN_bioentity_attribute 3 bioentity_attribute_type_id BioEntity Attribute Type int 4 0 N N IN_bioentity_attribute_type bioentity_attribute_type_id Y optionlist Y Y N "SELECT bioentity_attribute_type_id, bioentity_attribute_type_name FROM $TBIN_BIOENTITY_ATTRIBUTE_TYPE ORDER BY sort_order,bioentity_attribute_type_name" IN_bioentity_attribute 4 bioentity_attribute_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this BioEntity Attribute IN_bioentity_attribute 5 bioentity_attribute_value BioEntity Attribute Value varchar 255 0 N N Y text 40 Y Y Y Value of this BioEntity Attribute IN_bioentity_attribute 6 assay_id Assay int 4 0 Y N IN_assay assay_id N optionlist Y Y N "SELECT assay_id, assay_name FROM $TBIN_ASSAY ORDER BY assay_name" IN_bioentity_attribute 7 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_bioentity_attribute 8 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity_attribute 9 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_bioentity_attribute 10 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity_attribute 11 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_bioentity_attribute 12 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_bioentity_attribute 13 record_status Record Status char 1 0 N N N N N IN_bioentity_attribute_type 1 bioentity_attribute_type_id BioEntity Attribute Type ID int 4 0 N Y N N pkDEFAULT IN_bioentity_attribute_type 2 parent_bioentity_attribute_type_id Parent BioEntity Attribute Type int 4 0 Y N IN_bioentity_attribute_type bioentity_attribute_type_id N optionlist Y Y N Parent Type "SELECT bioentity_attribute_type_id, bioentity_attribute_type_name FROM $TBIN_BIOENTITY_ATTRIBUTE_TYPE ORDER BY sort_order,bioentity_attribute_type_name" IN_bioentity_attribute_type 3 bioentity_attribute_type_name BioEntity Attribute Type Name varchar 255 0 N N Y text 40 Y Y Y Name of this BioEntity Attribute Type IN_bioentity_attribute_type 4 bioentity_attribute_type_description Description varchar 255 0 N N Y text 50 Y Y N Longer description of this BioEntity Attribute Type IN_bioentity_attribute_type 5 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_bioentity_attribute_type 6 sort_order Sort Order int 4 0 N 10 N Y Y N Integer key by which these entities are usually sorted IN_bioentity_attribute_type 7 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity_attribute_type 8 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_bioentity_attribute_type 9 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity_attribute_type 10 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_bioentity_attribute_type 11 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_bioentity_attribute_type 12 record_status Record Status char 1 0 N N N N N IN_assay 1 assay_id Assay ID int 4 0 N Y N N pkDEFAULT IN_assay 2 assay_type_id Assay Type int 4 0 N N IN_assay_type assay_type_id Y optionlist Y Y N Assay Type "SELECT assay_type_id, assay_type_name FROM $TBIN_ASSAY_TYPE ORDER BY sort_order,assay_type_name" IN_assay 3 sample_type_id Sample Type int 4 0 Y N IN_sample_type sample_type_id N optionlist Y Y N Sample Type "SELECT sample_type_id, sample_type_name FROM $TBIN_SAMPLE_TYPE ORDER BY sort_order,sample_type_name" IN_assay 4 publication_id Publication int 4 0 Y N IN_publication publication_id N optionlist Y Y N Publication "SELECT publication_id, publication_name+'(PMID '+pubmed_ID+')' FROM $TBIN_PUBLICATION ORDER BY publication_name" IN_assay 5 assay_name Assay Name varchar 255 0 N N Y text 40 Y Y Y Name of this Assay IN_assay 6 assay_description Description varchar 255 0 N N Y textarea 4 Y Y N Longer description of this Assay IN_assay 7 assay_date Date Assay Performed datetime 8 0 Y N N text 20 Y Y N Date of Assay IN_assay 8 lab_notebook Lab Notebook varchar 255 0 Y N N text 40 Y Y N Lab Notebook IN_assay 9 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IN_assay 10 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_assay 11 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_assay 12 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_assay 13 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_assay 14 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_assay 15 record_status Record Status char 1 0 N N N N N IN_GetInteractions 1 project_id Projects Y multioptionlist 4 refreshDocument() Y Y N Constrain Interactions to one or more projects. At least one project must be selected. "SELECT DISTINCT P.project_id,UL.username+' - '+P.name FROM $TB_PROJECT P INNER JOIN $TBIN_INTERACTION_GROUP IG ON ( P.project_id = IG.project_id ) LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' ORDER BY UL.username+' - '+P.name,P.project_id" IN_GetInteractions 2 organism_id Organisms N multioptionlist 4 Y Y N "Constrain Interactions to selected Organisms. Multiple Organisms may be selected. If no Organisms are selected, ALL Interactions are searched." "SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name" IN_GetInteractions 3 interaction_group_id Interaction Groups N multioptionlist 4 Y Y N "Constrain Interactions to selected Interaction Groups. Multiple Interaction Groups may be selected. If no Interaction Groups are selected, ALL Interaction Groups are searched." "SELECT interaction_group_id,UL.username+' - '+P.project_tag+' - '+O.organism_name+' - '+IG.interaction_group_name FROM $TBIN_INTERACTION_GROUP IG INNER JOIN $TB_PROJECT P ON ( IG.project_id = P.project_id ) INNER JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id = UL.contact_id ) INNER JOIN $TB_ORGANISM O ON ( IG.organism_id = O.organism_id ) WHERE IG.project_id IN ( $parameters{project_id} ) ORDER BY UL.username,P.project_tag,O.organism_name,IG.interaction_group_name" IN_GetInteractions 4 bioentity_id BioEntities N multioptionlist 4 Y Y N "Constrain Interactions to selected BioEntities. Multiple BioEntities may be selected. If no BioEntities are selected, ALL Interactions are searched." "SELECT bioentity_id, bioentity_common_name + ' ' + ISNULL(BT.bioentity_type_name,'BioEntity Type?') + ' (' + ISNULL(O.organism_name,'Organism?') +')' AS ""bioentity_descriptor"" FROM $TBIN_BIOENTITY BE LEFT JOIN $TBIN_BIOENTITY_TYPE BT ON ( BE.bioentity_type_id = BT.bioentity_type_id ) LEFT JOIN $TB_ORGANISM O ON ( BE.organism_id = O.organism_id ) ORDER BY bioentity_common_name" IN_GetInteractions 5 bioentity_common_name BioEntity Common Name Constraint N text 40 Y Y N Constraint for BioEntity Common Names. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported. IN_GetInteractions 6 interaction_type_id Interaction Types N multioptionlist 4 Y Y N "Constrain Interactions to selected Interaction Types. Multiple Interaction Types may be selected. If no Interaction Types are selected, ALL Interaction Groups are searched." "SELECT interaction_type_id, interaction_type_name FROM $TBIN_INTERACTION_TYPE order by interaction_type_name" IN_GetInteractions 7 interactionDetailConstraintID Interaction Detail N optionlist 4 Y Y N "Constrain Interactions to Inter / Intra or All Interactions. If no Interaction Detail is selected, ALL Interactions are searched." "SELECT otherid , otherText FROM $TBIN_OTHER where otherTable = 'interaction' order by sortOrder" IN_GetInteractions 8 parentConstraintID BioEntity Parent Constraint N optionlist 4 Y Y N "Constrain Interactions to Inter / Intra or All Interactions. If no Interaction Detail is selected, ALL Interactions are searched." "SELECT otherid , otherText FROM $TBIN_OTHER where otherTable = 'bioentityMember' order by sortOrder" IN_GetInteractions 9 display_options Display Options N multioptionlist 3 Y Y N Various selectable table display options "SELECT option_key,option_value FROM $TBIN_QUERY_OPTION WHERE option_type = 'GI_display_options' ORDER BY sort_order,option_value" IN_GetInteractions 10 row_limit Maximum Rows N text 10 Y Y N "Limit the numbers of rows displayed. If not provided, default is 5000 rows." IN_bioentity_member 1 bioentity_member_id BioEntity Member int 4 0 N Y N N N N BioEntity Member ID IN_bioentity_member 2 parent_bioentity_id BioEntity Member Parent int 4 0 Y N IN_bioentity bioentity_id N N BioEntity Member Parent ID IN_bioentity_member 3 child_bioentity_id BioEntity Member Parent int 4 0 Y N IN_bioentity bioentity_id N N BioEntity Member Child ID IN_bioentity_member 4 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity_member 5 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IN_bioentity_member 6 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IN_bioentity_member 7 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IN_bioentity_member 8 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IN_bioentity_member 9 record_status Record Status char 1 0 N N N N N IN_GetBioentities 1 organism_id Organisms N multioptionlist 4 Y Y N "Constrain Bioentities to selected Organisms. Multiple Organisms may be selected. If no Organisms are selected, ALL Interactions are searched." "SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name" IN_GetBioentities 2 bioentity_exact_name BioEntity Exact Name Constraint N text 40 Y Y N Constraint for an exact Bioentity Name (common or canonical) IN_GetBioentities 3 bioentity_search_fragment BioEntity Search Fragment N text 40 Y Y N Fragment to search for in any of the bioentity names. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported. IN_Other 1 otherID Option ID int 4 0 N Y N N N IN_Other 2 otherText Option text varchar 255 0 Y N N N N IN_Other 3 otherTable Option Table varchar 255 0 Y N N N N IN_Other 4 sortOrder Sort Order int 4 0 Y N N N