table_name column_index column_name column_title datatype scale precision nullable default_value is_auto_inc fk_table fk_column_name is_required input_type input_length onChange is_data_column is_display_column is_key_field column_text optionlist_query url IJ_slide_type 1 slide_type_id Slide Type ID int 8 0 N Y N N pkDEFAULT IJ_slide_type 2 name Name varchar 50 0 N N Y text 50 Y Y Y Short name of this slide type IJ_slide_type 3 organism_id Organism int 8 0 N N organism_id Y optionlist Y Y N Organism for this type "SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name" IJ_slide_type 4 price Price float 8 0 Y N N text 25 Y Y N Arrays Lab price for this slide_type IJ_slide_type 5 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Additional comments IJ_slide_type 6 sort_order Sort Order int 4 0 N 10 N N N N IJ_slide_type 7 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_slide_type 8 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_slide_type 9 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_slide_type 10 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_slide_type 11 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_slide_type 12 record_status Record Status char 1 0 N N N N N IJ_cost_scheme 1 cost_scheme_id Cost Scheme ID int 8 0 N Y N N pkDEFAULT IJ_cost_scheme 2 cost_scheme_name Scheme Name varchar 50 0 N N Y text 50 Y Y Y Short name of this cost scheme IJ_cost_scheme 3 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Additional comments IJ_cost_scheme 4 sort_order Sort Order int 4 0 N 10 N N N N IJ_cost_scheme 5 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_cost_scheme 6 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_cost_scheme 7 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_cost_scheme 8 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_cost_scheme 9 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_cost_scheme 10 record_status Record Status char 1 0 N N N N N IJ_slide_type_cost 1 slide_type_cost_id Slide Type ID int 8 0 N Y N N pkDEFAULT IJ_slide_type_cost 2 slide_type_id Slide Type int 8 0 N N IJ_slide_type slide_type_id Y optionlist Y Y Y Slide Type for this price "SELECT slide_type_id, name FROM $TBIJ_SLIDE_TYPE ORDER BY sort_order,name" IJ_slide_type_cost 3 cost_scheme_id Cost Scheme int 8 0 N N IJ_cost_scheme cost_scheme_id Y optionlist Y Y Y Cost Scheme for this price "SELECT cost_scheme_id, cost_scheme_name FROM $TBIJ_COST_SCHEME ORDER BY sort_order,cost_scheme_name" IJ_slide_type_cost 4 price Price float 8 0 Y N Y text 25 Y Y N Arrays Lab price for this slide_type IJ_slide_type_cost 5 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Additional comments IJ_slide_type_cost 6 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_slide_type_cost 7 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_slide_type_cost 8 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_slide_type_cost 9 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_slide_type_cost 10 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_slide_type_cost 11 record_status Record Status char 1 0 N N N N N IJ_labeling_method 1 labeling_method_id Labeling Method ID int 8 0 N Y N N pkDEFAULT IJ_labeling_method 2 name Method Name varchar 100 0 N N Y text 50 Y Y Y Name of this labeling method IJ_labeling_method 3 xna_type_id xNA Type int 8 0 N N xna_type_id Y optionlist Y Y Y xNA type "SELECT xna_type_id, xna_type FROM $TBIJ_XNA_TYPE ORDER BY sort_order,xna_type" IJ_labeling_method 4 dye_id Dye int 8 0 N N dye_id Y optionlist Y Y Y Dye "SELECT dye_id, dye_name FROM $TBIJ_DYE ORDER BY dye_name" IJ_labeling_method 5 desired_micrograms Desired Micrograms float 8 0 Y N N text 25 Y Y N Number of micrograms required to label IJ_labeling_method 6 Ebase Ebase float 8 0 Y N Y text 25 Y Y N Extinction coefficient for a base IJ_labeling_method 7 MWbase MWbase float 8 0 Y N Y text 25 Y Y N Molecular weight for a base in g/mol IJ_labeling_method 8 price Price float 8 0 Y N N text 25 Y Y N Arrays Lab price for this labeling method IJ_labeling_method 9 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Additional notes IJ_labeling_method 10 sort_order Sort Order int 4 0 N 10 N N N N IJ_labeling_method 11 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_labeling_method 12 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_labeling_method 13 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_labeling_method 14 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_labeling_method 15 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_labeling_method 16 record_status Record Status char 1 0 N N N N N IJ_array_request 1 array_request_id Array Request ID int 8 0 N Y N N pkDEFAULT IJ_array_request 2 contact_id Contact int 8 0 N N contact contact_id Y current_contact_id Y Y N Requestor of these slides IJ_array_request 3 project_id Project int 8 0 N N project project_id Y optionlist Y Y N Project under which these slides are requested "SELECT project_id, name + ' ['+budget+']' FROM $TB_PROJECT WHERE PI_contact_id='$contact_id' ORDER BY name" IJ_array_request 4 cost_scheme_id Cost Structure varchar 50 0 N N N optionlist Y Y N Cost Structure from which pricing is calculated "SELECT cost_scheme_id,cost_scheme_name FROM $TBIJ_COST_SCHEME ORDER BY sort_order,cost_scheme_name" IJ_array_request 5 slide_type_id Slide Type int 8 0 N N IJ_slide_type slide_type_id Y optionlist Y Y N Slide Type MANUAL IJ_array_request 6 n_slides Number of Arrays int 8 0 N N Y text 10 Y Y N "Number of arrays in this request (note that for the Yeast Half slide option, the number of arrays you specify here is TWICE the number of pieces of glass)" IJ_array_request 7 n_samples_per_slide Samples per Array int 8 0 N N Y optionlist Y Y N Number of samples per array (usually 2) "SELECT option_key,option_value FROM $TBIJ_MISC_OPTION WHERE option_type='samples_per_slide' ORDER BY sort_order,option_value" IJ_array_request 8 hybridization_request Prep Request varchar 50 0 N N Y optionlist Y Y N Whether you want the arrays Group to perform labeling and hybridization (priced by labeling method) "SELECT option_key,option_value FROM $TBIJ_ARRAY_REQUEST_OPTION WHERE option_type='hybridization_request' ORDER BY sort_order,option_value" IJ_array_request 9 scanning_request Analysis Request varchar 50 0 N N Y optionlist Y Y N Whether you want the arrays Group to perform Scanning and Quantitation "SELECT option_key,option_value+' (\$'+CONVERT(varchar(50),price)+')' FROM $TBIJ_ARRAY_REQUEST_OPTION WHERE option_type='scanning_request' ORDER BY sort_order,option_value" IJ_array_request 10 request_status Request Status varchar 50 0 N N Y fixed Y Y N Status of this request "SELECT option_key,option_value FROM $TBIJ_MISC_OPTION WHERE option_type='job_status' ORDER BY sort_order,option_value" IJ_array_request 11 price Price int 8 0 Y N N fixed N Y N Total price for this request IJ_array_request 12 comment Comment text 0 0 Y N N textarea 4 Y Y N Additional comments about this request IJ_array_request 13 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N fixed N Y IJ_array_request 14 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_array_request 15 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N fixed N Y IJ_array_request 16 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_array_request 17 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_array_request 18 record_status Record Status char 1 0 N N N fixed N Y IJ_array_request_slide 1 array_request_slide_id Array Request Slide ID int 4 0 N Y Y N N pkDEFAULT IJ_array_request_slide 2 array_request_id Array Request ID int 4 0 N N IJ_array_request array_request_id Y optionlist Y Y Y Array request to which this requested slide belongs IJ_array_request_slide 3 slide_index Slide Index int 4 0 N N Y text 10 Y Y Y "Index of this slide within the request (1,2,3,4,etc.)" IJ_array_request_slide 4 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N Y IJ_array_request_slide 5 created_by_id Record Created By int 4 0 N N contact contact_id N N IJ_array_request_slide 6 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_array_request_slide 7 modified_by_id Record Modified By int 4 0 N N contact contact_id N N IJ_array_request_slide 8 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IJ_array_request_slide 9 record_status Record Status char 1 0 N N N N N IJ_array_request_sample 1 array_request_sample_id Array Request Sample ID int 4 0 N Y Y N N pkDEFAULT IJ_array_request_sample 2 array_request_slide_id Array Request Slide ID int 4 0 N N IJ_array_request_IJ_slide array_request_slide_id Y fixed N Y Y Array request slide to which this sample belongs pkDEFAULT IJ_array_request_sample 3 sample_index Sample Index int 4 0 N N Y fixed N Y Y "Index of this sample on the slide (1,2,3,4,etc.)" IJ_array_request_sample 4 name Sample Name varchar 50 0 N N Y text 50 Y Y N Sample Name. Keep it short. Do not use any strange characters like /\*&$() (e.g. NP Epi 03-123) IJ_array_request_sample 5 full_name Full Name varchar 255 0 N N Y textarea 3 Y Y N "Full Sample Name. A longer, less cryptic name should be placed here. It should be long enough so that someone else can understand quickly the general idea of the sample. (e.g. Epithelial cells FACS sorted from ""normal"" prostate tissue from specimen 03-123)" IJ_array_request_sample 6 labeling_method_id Labeling Method int 4 0 N N IJ_labeling_method labeling_method_id Y fixed N N N Labeling method requested for this sample. Not necessarily what was actually done? IJ_array_request_sample 7 sample_provider_organization_id Sample Provider int 4 0 Y N organization organization_id N optionlist Y Y N "Provider of this biomaterial (academic department, research lab, vendor, etc.)" "SELECT O.organization_id,O.organization FROM $TB_ORGANIZATION O INNER JOIN $TB_ORGANIZATION_TYPE OT ON (O.organization_type_id=OT.organization_type_id) WHERE O.record_status != 'D' ORDER BY organization" IJ_array_request_sample 8 organism_id Organism int 4 0 Y N organism organism_id N optionlist Y Y N Organism from which the biomaterial was derived "SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name" IJ_array_request_sample 9 strain_or_line Strain or Line varchar 255 0 Y N N text 50 Y Y N Strain or line of the individual IJ_array_request_sample 10 individual Individual varchar 255 0 Y N N text 50 Y Y N Identifier or name of the individual organism from which the biomaterial was derived IJ_array_request_sample 11 sex_ontology_term_id Sex int 4 0 Y N N optionlist Y Y N Sex of the individual "SELECT MOT2.MGED_ontology_term_id,MOT2.name FROM $TB_MGED_ONTOLOGY_RELATIONSHIP MOR INNER JOIN $TB_MGED_ONTOLOGY_TERM MOT2 ON ( MOR.subject_term_id = MOT2.MGED_ontology_term_id ) WHERE MOR.object_term_id = 5497 ORDER BY MOT2.name" IJ_array_request_sample 12 age Age varchar 255 0 Y N N text 50 Y Y N "Age of the individual at the time of harvest of the biomaterial. Free form text; include units, developmental stage, and reference point as appropriate (e.g., days since planting, years after birth, minutes after death)" IJ_array_request_sample 13 organism_part Organism Part varchar 255 0 Y N N text 50 Y Y N "Part of the organism's anatomy from the biomaterial was derived, excludes cells. (e.g., tissue, organ, system, or body location)" IJ_array_request_sample 14 cell_line Cell Line varchar 255 0 Y N N text 50 Y Y N Identifier for the cell line if one was used as a biomaterial IJ_array_request_sample 15 cell_type Cell Type varchar 255 0 Y N N text 50 Y Y N "Type of cell used as the biomaterial (e.g., epithelial, glial, etc.)" IJ_array_request_sample 16 disease_state Disease State varchar 255 0 Y N N text 50 Y Y N "Name of the pathology diagnosed in the organism from which the biomaterial was derived. The disease state is ""normal"" if no disease state has been diagnosed." IJ_array_request_sample 17 protocol_ids Protocols varchar 255 0 Y N IJ_sample_protocol sample_protocol_id N multilink 4 Y Y N Select all protocols that apply to this biomaterial. Describe sequence of protocols in the Treatment Description below "SELECT protocol_id,P.name FROM $TB_PROTOCOL P LEFT JOIN $TB_PROTOCOL_TYPE PT ON ( P.protocol_type_id=PT.protocol_type_id ) WHERE P.record_status != 'D' ORDER BY P.name" IJ_array_request_sample 18 protocol_deviations Protocol Deviations text 16 0 Y N N textarea 4 Y Y N Describe any deviations from the selected protocols IJ_array_request_sample 19 sample_description Sample Description text 16 0 Y N N textarea 4 Y Y N Describe the biomaterial briefly IJ_array_request_sample 20 sample_preparation_date Sample Preparation Date datetime 8 0 N N N text 30 Y Y Y Date/time the biomaterial was prepared with the described protocols IJ_array_request_sample 21 treatment_description Treatment Description text 16 0 Y N N textarea 4 Y Y N "Describe the treatment of the biomaterials, including mention of the selected protocols" IJ_array_request_sample 22 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional notes IJ_array_request_sample 23 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N Y IJ_array_request_sample 24 created_by_id Record Created By int 4 0 N N contact contact_id N N IJ_array_request_sample 25 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_array_request_sample 26 modified_by_id Record Modified By int 4 0 N N contact contact_id N N IJ_array_request_sample 27 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IJ_array_request_sample 28 record_status Record Status char 1 0 N N N N N IJ_sample_protocol 1 sample_protocol_id Sample Protocol int 4 0 N Y N N N IJ_sample_protocol 2 array_request_sample_id Array Request Sample ID int 4 0 N N IJ_array_request_sample array_request_sample_id Y N N Y Array request sample ID IJ_sample_protocol 3 protocol_id Protocol ID int 4 0 N N protocol protocol_id Y N N Y Protocol ID IJ_sample_protocol 4 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_sample_protocol 5 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IJ_sample_protocol 6 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_sample_protocol 7 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IJ_sample_protocol 8 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IJ_sample_protocol 9 record_status Record Status char 1 0 N N N N N IJ_slide_model 1 slide_model_id Slide Model ID int 8 0 N Y N N pkDEFAULT IJ_slide_model 2 vendor_name Vendor Name varchar 50 0 N N Y text 50 Y Y Y Vendor for this slide model IJ_slide_model 3 model_name Model Name varchar 50 0 N N Y text 50 Y Y Y Model name of these slides IJ_slide_model 4 contact_id Contact int 8 0 N N contact contact_id Y optionlist Y Y Y Vendor contact entry for these slides "SELECT contact_id, first_name+' '+last_name+' ('+organization+')' AS 'name' FROM $TB_CONTACT C JOIN $TB_ORGANIZATION O ON ( C.organization_id = O.organization_id ) ORDER BY organization,last_name,first_name" IJ_slide_model 5 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Additional comments IJ_slide_model 6 sort_order Sort Order int 4 0 N 10 N N N N IJ_slide_model 7 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_slide_model 8 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_slide_model 9 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_slide_model 10 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_slide_model 11 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_slide_model 12 record_status Record Status char 1 0 N N N N N IJ_slide_lot 1 slide_lot_id Slide Lot ID int 8 0 N Y N N pkDEFAULT IJ_slide_lot 2 slide_model_id Slide Model int 8 0 N N IJ_slide_model slide_model_id Y optionlist Y Y Y Model name of these slides "SELECT slide_model_id,vendor_name+' '+model_name AS 'name' FROM $TBIJ_SLIDE_MODEL ORDER BY 2" IJ_slide_lot 3 lot_number Lot Number varchar 50 0 N N Y text 50 Y Y Y Lot number of these slides IJ_slide_lot 4 date_received Date Received datetime 8 0 Y N N textdate 30 Y Y N Date this lot was received IJ_slide_lot 5 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Additional comments IJ_slide_lot 6 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_slide_lot 7 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_slide_lot 8 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_slide_lot 9 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_slide_lot 10 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_slide_lot 11 record_status Record Status char 1 0 N N N N N IJ_printing_batch 1 printing_batch_id Printing Batch ID int 8 0 N Y N N pkDEFAULT IJ_printing_batch 2 slide_type_id Slide Type int 8 0 N N IJ_slide_type slide_type_id Y optionlist Y Y Y Slide type "SELECT slide_type_id, name FROM $TBIJ_SLIDE_TYPE ORDER BY sort_order,name" IJ_printing_batch 3 protocol_id Protocol int 8 0 N N protocol protocol_id Y optionlist Y Y Y Protocol for this printing "SELECT protocol_id,P.name FROM $TB_PROTOCOL P LEFT JOIN $TB_PROTOCOL_TYPE PT ON ( P.protocol_type_id=PT.protocol_type_id ) WHERE PT.name='array_printing' AND P.record_status != 'D' ORDER BY P.name" IJ_printing_batch 4 date_started Date Started datetime 8 0 N N Y text 30 Y Y Y Date/time the printing began IJ_printing_batch 5 date_finished Date Finished datetime 8 0 Y N N text 30 Y Y N Date/time the printing finished IJ_printing_batch 6 number_of_spots Number of Spots int 4 0 Y N N text 10 Y Y N Number of spots per slide IJ_printing_batch 7 spot_spacing Spot Spacing (microns) float 8 0 N N Y text 10 Y Y N Spacing of the spots IJ_printing_batch 8 solvent Solvent varchar 50 0 N N Y optionlist Y Y N Solvent used "SELECT option_key,option_value FROM $TBIJ_MISC_OPTION WHERE option_type='solvent' ORDER BY sort_order,option_value" IJ_printing_batch 9 temperature Temperature float 8 0 Y N N text 10 Y Y N Temperature during printing IJ_printing_batch 10 humidity Humidity float 8 0 Y N N text 10 Y Y N Humidity during printing IJ_printing_batch 11 post_treatment Post Treatment varchar 50 0 N N Y optionlist Y Y N Post treatment of slides "SELECT option_key,option_value FROM $TBIJ_MISC_OPTION WHERE option_type='post_treatment' ORDER BY sort_order,option_value" IJ_printing_batch 12 slide_list Slide List varchar 255 0 Y N N text 50 Y Y N Serial numbers of slides printed (NOTE: this is a non-binding entry; it does not automatically create slides associated with this printing) IJ_printing_batch 13 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Additional comments IJ_printing_batch 14 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_printing_batch 15 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_printing_batch 16 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_printing_batch 17 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_printing_batch 18 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_printing_batch 19 record_status Record Status char 1 0 N N N N N IJ_slide 1 slide_id Slide ID int 8 0 N Y N N pkDEFAULT IJ_slide 2 slide_lot_id Slide Lot int 8 0 N N IJ_slide_lot slide_lot_id Y optionlist Y Y Y Slide Lot "SELECT slide_lot_id, vendor_name+' '+model_name+' # '+lot_number FROM $TBIJ_SLIDE_LOT SL LEFT JOIN $TBIJ_SLIDE_MODEL SM ON (SL.slide_model_id=SM.slide_model_id) ORDER BY 2" IJ_slide 3 slide_number Slide Number int 4 0 N N Y text 10 Y Y Y "Slide Number (you may enter a range such as 50-68,70-75 to generate many entries)" IJ_slide 4 barcode Barcode varchar 50 0 Y N N text 25 Y Y Y Barcode IJ_slide 5 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Additional comments IJ_slide 6 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_slide 7 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_slide 8 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_slide 9 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_slide 10 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_slide 11 record_status Record Status char 1 0 N N N N N IJ_array_layout 1 layout_id Layout ID int 8 0 N Y N N pkDEFAULT IJ_array_layout 2 slide_type_id Slide Type int 8 0 N N IJ_slide_type slide_type_id Y optionlist Y Y Y Slide type "SELECT slide_type_id, name FROM $TBIJ_SLIDE_TYPE ORDER BY sort_order,name" IJ_array_layout 3 name name varchar 50 0 N N Y text 25 setLayoutFileName() Y Y Y Name of this layout IJ_array_layout 4 data_file Data File varchar 100 0 N N N file 50 N N N Click Browse and select the file to upload to the database IJ_array_layout 5 biosequence_set_id Biosequence Set int 8 0 N N IJ_biosequence_set biosequence_set_id Y optionlist Y Y N Biosequence Set pertaining to this layout "SELECT biosequence_set_id, set_name FROM $TBIJ_BIOSEQUENCE_SET ORDER BY sort_order,set_name" IJ_array_layout 6 source_filename Source Filename varchar 100 0 N N Y text 50 Y Y N Enter the network location of the key file IJ_array_layout 7 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Additional comments IJ_array_layout 8 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_array_layout 9 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_array_layout 10 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_array_layout 11 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_array_layout 12 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_array_layout 13 record_status Record Status char 1 0 N N N N N IJ_array 1 array_id Layout ID int 8 0 N Y document.forms[0].IJ_array_name.value=document.forms[0].IJ_slide_id.options[document.forms[0].IJ_slide_id.selectedIndex].text N N pkDEFAULT IJ_array 2 project_id Project int 8 0 N N project project_id Y optionlist Y Y N Project to which this microarray is to be assigned "SELECT project_id, username+' - '+name FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN US ON ( P.PI_contact_id=US.contact_id ) ORDER BY name" IJ_array 3 layout_id Layout int 8 0 N N IJ_array_layout layout_id Y optionlist Y Y N Layout name associated with this microarray "SELECT layout_id, ST.name+' - '+AL.name FROM $TBIJ_ARRAY_LAYOUT AL LEFT JOIN $TBIJ_SLIDE_TYPE ST ON ( AL.slide_type_id=ST.slide_type_id ) ORDER BY ST.name,AL.name" IJ_array 4 printing_batch_id Printing Batch int 8 0 N N IJ_printing_batch printing_batch_id Y optionlist Y Y N Printing batch in which this microarray was produced "SELECT printing_batch_id, ST.name+' ('+slide_list+') ('+SUBSTRING(CONVERT(varchar(50),date_started,121),1,16)+')' FROM $TBIJ_PRINTING_BATCH PB LEFT JOIN $TBIJ_SLIDE_TYPE ST ON ( PB.slide_type_id=ST.slide_type_id ) ORDER BY ST.name,date_started" IJ_array 5 slide_id Slide int 8 0 N N IJ_slide slide_id Y scrolloptionlist 4 setArrayName() Y Y N Slide serial number for this microarray (choose only one slide) "SELECT S.slide_id, convert(varchar(20),slide_number)+CASE WHEN A.slide_id IS NOT NULL THEN ' - *DONE*' ELSE '' END FROM $TBIJ_SLIDE S LEFT JOIN $TBIJ_ARRAY A ON ( S.slide_id=A.slide_id ) ORDER BY slide_number" IJ_array 6 array_name Array Name varchar 50 0 N N Y text 25 Y Y Y "Official Name of this microarray that it will be subsequently referred to (usually just the serial number of the slide, but can be different)" IJ_array 7 array_request_slide_id Requested Slide ID int 8 0 N N array_request_slide_id Y scrolloptionlist 4 Y Y N ID assigned to this slide during the array request process MANUAL IJ_array 8 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Optional comment about this particular microarray IJ_array 9 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_array 10 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_array 11 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_array 12 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_array 13 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_array 14 record_status Record Status char 1 0 N N N N N IJ_labeling 1 labeling_id Labeling ID int 8 0 N Y N N pkDEFAULT IJ_labeling 2 array_request_sample_id Array Request Sample ID int 8 0 N N array_request_sample_id Y multioptionlist 4 Y Y Y "Sample ID number - Sample name (you may select several samples to enter at once, but note all values will be the same)" MANUAL IJ_labeling 3 protocol_id Protocol int 8 0 N N protocol protocol_id Y optionlist Y Y N Protocol used for labeling "SELECT protocol_id,P.name FROM $TB_PROTOCOL P LEFT JOIN $TB_PROTOCOL_TYPE PT ON ( P.protocol_type_id=PT.protocol_type_id ) WHERE PT.name='extract_labeling' OR PT.name='Genicon Labeling' ORDER BY P.name" IJ_labeling 4 protocol_deviations Protocol Deviations text 16 0 Y N N textarea 4 Y Y N List any deviations from the selected protocol IJ_labeling 5 spiking_controls Spiking Controls text 16 0 Y N N textarea 4 Y Y N "Describe the external controls added to the extract, including which features are expected to hybridize with control, spike type, and expected values or other parameters." IJ_labeling 6 date_labeled Date Labeled datetime 8 0 N CURRENT_TIMESTAMP N N textdate 30 Y Y N Date/time the labeling was performed IJ_labeling 7 dye_lot_number Dye Lot # varchar 25 0 Y N Y text 10 Y Y N Lot number of dye used IJ_labeling 8 absorbance_260 Absorbance at 260nm float 8 0 Y N N text 10 Y Y N Absorbance value at 260 nm IJ_labeling 9 absorbance_lambda Absorbance at dyeWL float 8 0 Y N N text 10 Y Y N Absorbance value at the reference wavelength for the dye used IJ_labeling 10 volume Volume float 8 0 Y N N text 10 Y Y N Volume in microliters (ul) IJ_labeling 11 dilution_factor Dilution Factor float 8 0 Y N N text 10 refreshDocument() Y Y N Dilutional factor IJ_labeling 12 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Additional comments about this step IJ_labeling 13 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_labeling 14 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_labeling 15 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_labeling 16 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_labeling 17 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_labeling 18 record_status Record Status char 1 0 N N N N N IJ_hybridization 1 hybridization_id Hybridization ID int 8 0 N Y N N pkDEFAULT IJ_hybridization 2 name Batch Name varchar 100 0 Y N N text 25 Y Y N Arbitrary name for this hybridization IJ_hybridization 3 protocol_id Protocol int 8 0 N N protocol protocol_id Y optionlist Y Y N Protocol used for this step "SELECT protocol_id,P.name FROM $TB_PROTOCOL P LEFT JOIN $TB_PROTOCOL_TYPE PT ON ( P.protocol_type_id=PT.protocol_type_id ) WHERE PT.name='hybridization' ORDER BY P.name" IJ_hybridization 4 array_id Array Name int 8 0 N N IJ_array array_id Y multioptionlist 4 Y Y Y Array Name (must already have been defined) "SELECT A.array_id,array_name+CASE WHEN H.array_id IS NOT NULL THEN ' - *DONE*' ELSE '' END, H.array_id FROM $TBIJ_ARRAY A LEFT JOIN $TBIJ_HYBRIDIZATION H ON ( A.array_id=H.array_id ) ORDER BY A.array_name" IJ_hybridization 5 date_hybridized Date Hybridized datetime 8 0 N CURRENT_TIMESTAMP N Y textdate 30 Y Y N Date/time this was performed IJ_hybridization 6 prehyb_chamber PreHyb Chamber varchar 25 0 Y N N text 10 Y Y N IJ_hybridization 7 hyb_chamber Hyb Chamber varchar 25 0 Y N N text 10 Y Y N IJ_hybridization 8 wash_chamber Wash Chamber varchar 25 0 Y N N text 10 Y Y N IJ_hybridization 9 deviations Deviations from Protocol varchar 1000 0 Y N N textarea 4 Y Y N Text describing any deviations from the protocol or other comments IJ_hybridization 10 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_hybridization 11 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_hybridization 12 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_hybridization 13 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_hybridization 14 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_hybridization 15 record_status Record Status char 1 0 N N N N N IJ_array_scan 1 array_scan_id Array Scan ID int 8 0 N Y N N pkDEFAULT IJ_array_scan 2 array_id Array Name int 8 0 N N IJ_array array_id Y scrolloptionlist 4 setDefaultImagesLocation() Y Y Y Array Name which was scanned "SELECT A.array_id,array_name+CASE WHEN S.array_id IS NOT NULL THEN ' - *DONE*' ELSE '' END, S.array_id FROM $TBIJ_ARRAY A LEFT JOIN $TBIJ_ARRAY_SCAN S ON ( A.array_id=S.array_id ) WHERE A.record_status != 'D' ORDER BY A.array_name" IJ_array_scan 3 protocol_id Protocol int 8 0 N N protocol protocol_id Y optionlist Y Y N Protocol used for scanning "SELECT protocol_id,P.name FROM $TB_PROTOCOL P LEFT JOIN $TB_PROTOCOL_TYPE PT ON ( P.protocol_type_id=PT.protocol_type_id ) WHERE PT.name='array_scanning' ORDER BY P.name" IJ_array_scan 4 protocol_deviations Protocol Deviations text 16 0 Y N N textarea 4 Y Y N List any deviations from the selected protocol IJ_array_scan 5 resolution Resolution float 8 0 Y N Y text 10 Y Y N Scan resolution in microns IJ_array_scan 6 stage_location Orig Data Location varchar 255 0 Y N Y text 60 refreshDocument() Y Y Y Location of the source data directory (containing the Images/ subdirectory) IJ_array_scan 7 uri Data URI varchar 255 0 Y N N text 60 N N N Internal database URI for data directory SELF IJ_array_scan 8 data_flag Data Flag varchar 10 0 N N Y optionlist Y Y N "OK, or set to BAD if this scan should not be processed" "SELECT option_key,option_value FROM $TBIJ_MISC_OPTION WHERE option_type='data_flag' ORDER BY sort_order,option_value" IJ_array_scan 9 date_scanned Date Scanned datetime 8 0 N CURRENT_TIMESTAMP N N textdate 30 Y Y N Date and time the slide was scanned (optional; will be replaced with file timestamps eventually) IJ_array_scan 10 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Optional comment about this particular microarray scan IJ_array_scan 11 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_array_scan 12 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_array_scan 13 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_array_scan 14 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_array_scan 15 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_array_scan 16 record_status Record Status char 1 0 N N N N N IJ_array_quantitation 1 array_quantitation_id Array Quantitation ID int 8 0 N Y N N pkDEFAULT IJ_array_quantitation 2 array_scan_id Array Name int 8 0 N N IJ_array_scan array_scan_id Y scrolloptionlist 4 setDefaultQALocation() Y Y Y Array Name which was quantitated MANUAL IJ_array_quantitation 3 protocol_id Protocol int 8 0 N N protocol protocol_id Y optionlist Y Y N Protocol used for spot finding "SELECT protocol_id,P.name FROM $TB_PROTOCOL P LEFT JOIN $TB_PROTOCOL_TYPE PT ON ( P.protocol_type_id=PT.protocol_type_id ) WHERE PT.name='image_analysis' ORDER BY P.name" IJ_array_quantitation 4 stage_location Orig Data Location varchar 255 0 Y N Y text 60 refreshDocument() Y Y Y Location of the output data file IJ_array_quantitation 5 uri Data URI varchar 255 0 Y N N text 60 N N N Internal database URI for data directory IJ_array_quantitation 6 data_flag Data Flag varchar 10 0 N N Y optionlist Y Y N "OK, or set to BAD if this quantitation should not be processed" "SELECT option_key,option_value FROM $TBIJ_MISC_OPTION WHERE option_type='data_flag' ORDER BY sort_order,option_value" IJ_array_quantitation 7 date_quantitated Date Quantitated datetime 8 0 N CURRENT_TIMESTAMP N N textdate 30 Y Y N Date and time the slide was quantitated (optional; will be replaced with file timestamps eventually) IJ_array_quantitation 8 comment Comment varchar 255 0 Y N N textarea 4 Y Y N Optional comment about this particular quantitation IJ_array_quantitation 9 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_array_quantitation 10 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_array_quantitation 11 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_array_quantitation 12 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_array_quantitation 13 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_array_quantitation 14 record_status Record Status char 1 0 N N N N N IJ_biosequence_set 1 biosequence_set_id BioSequence Set ID int 4 0 N Y N N pkDEFAULT IJ_biosequence_set 2 project_id Owner Project int 4 0 N N project project_id Y optionlist Y Y N Project under which this Biosequence Set is organized and for which user privileges is controlled "SELECT DISTINCT P.project_id,UL.username+' - '+P.name FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' AND P.project_id IN ( $accessible_project_ids ) ORDER BY UL.username+' - '+P.name,P.project_id" IJ_biosequence_set 3 organism_id Organism int 4 0 N N organism organism_id Y optionlist Y Y N Organism to which the BioSequences in this database belong "SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name" IJ_biosequence_set 4 set_name Set Name varchar 100 0 N N Y text 50 Y Y N Name of this BioSequence database IJ_biosequence_set 5 set_tag Set Tag varchar 50 0 N N Y text 20 Y Y Y Short tag (name) of this BioSequence database IJ_biosequence_set 6 set_description Set Description varchar 255 0 N N Y text 50 Y Y N Longer description of this BioSequence database IJ_biosequence_set 7 set_version Set Version varchar 50 0 N N Y text 40 Y Y N Version of this BioSequence database IJ_biosequence_set 8 polymer_type_id Polymer Type int 4 0 N N BL_polymer_type polymer_type_id Y optionlist Y Y N "Polymer type (e.g. protein, DNA, RNA) for the BioSequences in this database" "SELECT polymer_type_id, polymer_type_name FROM $TBBL_POLYMER_TYPE ORDER BY sort_order,polymer_type_name" IJ_biosequence_set 9 upload_file Upload file varchar 255 0 Y N N file 40 Y Y N File path of this BioSequence database if to be uploaded via the web interface IJ_biosequence_set 10 set_path Set Path varchar 255 0 N N Y text 50 Y Y N File path of this BioSequence database IJ_biosequence_set 11 source_file_date Source File Date datetime 8 0 Y N N text 40 N N N Date of the FASTA file at last update IJ_biosequence_set 12 uri URI varchar 255 0 Y N N text 50 Y Y N External web page or other URI SELF IJ_biosequence_set 13 comment Comment text 16 0 Y N N textarea 4 Y Y N Additional comments IJ_biosequence_set 14 sort_order Sort Order int 4 0 N 10 N N text 20 Y Y N Allows the ordering or ranking of Biosequence Sets which is used to break ties for choosing canonical names. Lower numbers indicate better rank. IJ_biosequence_set 15 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_biosequence_set 16 created_by_id Record Created By int 4 0 N 1 N contact contact_id N N IJ_biosequence_set 17 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_biosequence_set 18 modified_by_id Record Modified By int 4 0 N 1 N contact contact_id N N IJ_biosequence_set 19 owner_group_id Owner Group ID int 4 0 N 1 N work_group work_group_id N N IJ_biosequence_set 20 record_status Record Status char 1 0 N N N N N IJ_channel 1 channel_id Channel ID int 8 0 N Y N N pkDEFAULT IJ_channel 2 channel_name Channel Name varchar 50 0 N N Y text 50 Y Y Y Channel Name IJ_channel 3 channel_desc Channel Description varchar 255 0 Y N N textarea 4 Y Y N Channel Descrption IJ_channel 4 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_channel 5 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_channel 6 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_channel 7 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_channel 8 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_channel 9 record_status Record Status char 1 0 N N N N N IJ_server 1 server_id Server ID int 8 0 N Y N N pkDEFAULT IJ_server 2 server_name Server Name varchar 50 0 N N Y text 50 Y Y Y Server Name IJ_server 3 server_desc Server Description varchar 255 0 Y N N textarea 4 Y Y N Server Description IJ_server 4 server_ip Server IP varchar 15 0 Y N N text 50 Y Y N Server IP IJ_server 5 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_server 6 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_server 7 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_server 8 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_server 9 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_server 10 record_status Record Status char 1 0 N N N N N IJ_file_path 1 file_path_id File Path ID int 8 0 N Y N N pkDEFAULT IJ_file_path 2 file_path_name File Path Name varchar 50 0 N N Y text 50 Y Y Y File Path Name IJ_file_path 3 file_path_desc File Path Description varchar 255 0 Y N N text 50 Y Y N File Path Description IJ_file_path 4 file_path File Path varchar 2000 0 N N Y text 50 Y Y N File Path IJ_file_path 5 server_id Server ID int 8 0 N N server server_id Y optionlist Y Y N Server ID "SELECT server_id,server_name FROM $TBIJ_SERVER WHERE record_status != 'D'" IJ_file_path 6 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_file_path 7 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_file_path 8 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_file_path 9 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_file_path 10 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_file_path 11 record_status_id Record Status char 1 0 N N N N N IJ_file_location 1 file_location_id File Location int 8 0 N Y N N Y File Location ID pkDEFAULT IJ_file_location 2 file_name File Name varchar 2000 0 N N Y text 50 Y Y N Name of File IJ_file_location 3 file_type_id File Type ID int 8 0 N N IJ_file_type file_type_id Y optionlist Y Y Y File Type ID "SELECT file_type_id, file_type_name FROM $TBIJ_FILE_TYPE WHERE record_status != 'D'" IJ_file_location 4 file_path_id File Path ID int 8 0 N N IJ_file_path file_path_id Y optionlist Y Y Y File Path ID "SELECT file_path_id, file_path_name FROM $TBIJ_FILE_PATH WHERE record_status != 'D'" IJ_file_location 5 file_size File Size int 8 0 Y N N N N File Size IJ_file_location 6 digital_signature Digital Signature varchar 2000 0 Y N N N N Digital Signature IJ_file_location 7 file_zipped_flag File Zipped Flag bit 1 0 N N N N N IJ_file_location 8 file_name_zipped File Name Zipped varchar 2000 0 Y N N N N Zipped File Name IJ_file_location 9 file_size_zipped File Size Zipped int 8 0 Y N N N N Zipped File Size IJ_file_location 10 digital_signature_zipped Digital Signature Zipped varchar 2000 0 Y N N N N IJ_file_location 11 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N N IJ_file_location 12 created_by_id Record Created By int 8 0 N N contact contact_id N N Y IJ_file_location 13 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N N IJ_file_location 14 modified_by_id Record Modified By int 8 0 N N contact contact_id N N Y IJ_file_location 15 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N Y IJ_file_location 16 record_status Record Status char 1 0 Y N N N N N IJ_file_type 1 file_type_id File Type ID int 8 0 N Y N N File Type ID pkDEFAULT IJ_file_type 2 file_type_name File Type Name varchar 50 0 N N Y text 50 Y Y Y File Type Name IJ_file_type 3 file_type_desc File Type Description varchar 255 0 Y N N textarea 4 Y Y N File Type Description IJ_file_type 4 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_file_type 5 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_file_type 6 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_file_type 7 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_file_type 8 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_file_type 9 record_status Record Status char 1 0 Y N N N N IJ_quantitation_type 1 quantitation_type_id Quantitation Type ID int 8 0 N Y N N Quantitation Type ID pkDEFAULT IJ_quantitation_type 2 quantitation_type_name Quantitation Type Name varchar 50 0 N N Y text 50 Y Y Y Quantitation Type Name IJ_quantitation_type 3 quantitation_type_desc Quantitation Type Description varchar 255 0 Y N N textarea 4 Y Y N Quantitation Type Description IJ_quantitation_type 4 date_created Date Record Created datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_quantitation_type 5 created_by_id Record Created By int 8 0 N N contact contact_id N N IJ_quantitation_type 6 date_modified Date Record Modified datetime 8 0 N CURRENT_TIMESTAMP N N N IJ_quantitation_type 7 modified_by_id Record Modified By int 8 0 N N contact contact_id N N IJ_quantitation_type 8 owner_group_id Owner Group ID int 8 0 N 1 N work_group work_group_id N N IJ_quantitation_type 9 record_status Record Status char 1 0 Y N N N N IJ_GetExpression 1 condition_id Conditions N multioptionlist 6 Y Y N Select desired Conditions to include in query. Multiple items may be selected. At least one must be selected MANUAL IJ_GetExpression 2 gene_name_constraint Gene Name Constraint N text 40 Y Y N Constraint for the Gene Name as provided in the raw pipeline output. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported. IJ_GetExpression 3 second_name_constraint Second Name Constraint N text 40 Y Y N Constraint for the Second Name as provided in the raw pipeline output. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported. IJ_GetExpression 4 biosequence_name_constraint Biosequence Name Constraint N text 40 Y Y N Constraint for the Biosequence Name. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported. IJ_GetExpression 5 description_constraint Biosequence Description Constraint N text 40 Y 2 N Constraint for the Biosequence Description. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported. IJ_GetExpression 6 log10_ratio_constraint log10 Ratio Constraint N text 20 Y Y N "Constraint for the log 10 ratio of expression. Allowed syntax: ""n.n"", ""> n.n"", ""< n.n"", ""between n.n and n.n"", ""n.n +- n.n""" IJ_GetExpression 7 p_value_constraint P Value Constraint N text 20 Y Y N "Constraint for the P value of expression. Allowed syntax: ""n.n"", ""> n.n"", ""< n.n"", ""between n.n and n.n"", ""n.n +- n.n""" IJ_GetExpression 8 lambda_constraint Lambda Constraint N text 20 Y Y N "Constraint for the lamba value of expression. Allowed syntax: ""n.n"", ""> n.n"", ""< n.n"", ""between n.n and n.n"", ""n.n +- n.n""" IJ_GetExpression 9 display_columns Data Columns to Display N multioptionlist 4 Y Y N Desired data columns to display (or pivot) for the expression measurements "SELECT option_key,option_value FROM $TBIJ_QUERY_OPTION WHERE option_type = 'GE_data_columns' ORDER BY sort_order,option_value" IJ_GetExpression 10 molecular_function_constraint Molecular Function Constraint N text 40 Y N N Constraint for the GO Molecular Function. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported. IJ_GetExpression 11 biological_process_constraint Biological Process Constraint N text 40 Y N N Constraint for the GO Biological Process. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported. IJ_GetExpression 12 cellular_component_constraint Cellular Component Constraint N text 40 Y N N Constraint for the GO Cellular Component. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported. IJ_GetExpression 13 sort_order Sort Order N optionlist Y N N Desired display sorting order (DESC means descending: highest to lowest) "SELECT option_key,option_value FROM $TBIJ_QUERY_OPTION WHERE option_type = 'GE_sort_options' ORDER BY sort_order,option_value" IJ_GetExpression 14 display_options Display Options N multioptionlist 5 Y Y N Various selectable table display options "SELECT option_key,option_value FROM $TBIJ_QUERY_OPTION WHERE option_type = 'GE_display_options' ORDER BY sort_order,option_value" IJ_GetExpression 15 row_limit Maximum Rows N text 10 Y Y N "Limit the numbers of rows displayed. If not provided, default is 10000 rows."