table_name	column_index	column_name	column_title	datatype	scale	precision	nullable	default_value	is_auto_inc	fk_table	fk_column_name	is_required	input_type	input_length	onChange	is_data_column	is_display_column	is_key_field	column_text	optionlist_query	url
CY_fcs_run	1	fcs_run_id	FCS Run ID	int	4	0	N		Y							N	N				pkDEFAULT
CY_fcs_run	2	organism_id	Organism	int	4	0	N		N	organism	organism_id	Y	optionlist			Y	Y	N	Organism from which this sample was acquired	"SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name"	
CY_fcs_run	3	project_id	Project	int	4	0	N		N	project	project_id	Y	optionlist			Y	Y	N	Project to which the FCS Run belongs	"SELECT DISTINCT P.project_id,UL.username+' - '+P.name + '['+P.budget+']'FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' AND project_id IN ( $accessible_project_ids ) ORDER BY UL.username+' - '+P.name + '['+P.budget+']',P.project_id"	
CY_fcs_run	4	project_designator	Project Designator	varchar	255	0	N		N			N	text	50		Y	Y	Y	Project designator for this FCS Run (originally from the run header file but changeable)		
CY_fcs_run	5	sample_name	Sample Name	varchar	255	0	N		N			Y	text	50		Y	Y	Y	"Sample name for this FCS Run. Format: SpecimenNameTissueType_(SortType_SortEntity)n. Example: 04-123p_M_CD138_F_Hoechst. TissueType: p = prostate, b = bladder. SortType: M = MACS, F = FCS.  "		
CY_fcs_run	6	sort_entity_id	Sort Entity	int	4	0	Y		N	CY_sort_entity	sort_entity_id	N	optionlist			Y	Y	N	Entity used to sort sample with	"SELECT sort_entity_id, sort_entity_name from $TBCY_SORT_ENTITY where record_status != 'D' order by sort_entity_name"	
CY_fcs_run	7	tissue_type_id	Tissue Type	int	4	0	Y		N	CY_tissue_type	tissue_type_id	N	optionlist			Y	Y	N	Sorted Tissue Type	"SELECT tissue_type_id, tissue_type_name from $TBCY_TISSUE_TYPE where record_status != 'D'order by tissue_type_name"	
CY_fcs_run	8	sortedCellType	Sorted Cell type 	varchar	255	0	Y		N			N	text	50		Y	Y	N	Sorted Cell Type 		
CY_fcs_run	9	sort_type_id	Sort type	int	4	0	Y		N	CY_sort_type	sort_type_id	N	optionlist			Y	Y	N	"Sort Technique (MACS, FCS)"	"SELECT sort_type_id, sort_type_name from $TBCY_SORT_TYPE where record_status != 'D' order by sort_type_name"	
CY_fcs_run	10	fcs_run_description	FCS Run Description	text	16	0	Y		N			N	textarea	4		Y	Y	N	Detailed description of the sample and/or how the FCS Run was performed		
CY_fcs_run	11	operator	Operator	varchar	255	0	Y	T.Peterson	N			N	text	50		Y	Y	N	Instrument Operator		
CY_fcs_run	12	institution	Institution	varchar	255	0	Y	ISB	N			N	text	50		Y	Y	N	Institution		
CY_fcs_run	13	filename	Filename	varchar	255	0	Y		N			N	fixed	50		Y	N	N	Filename of the original FCS Run file		
CY_fcs_run	14	original_filepath	Original Filepath	varchar	255	0	N		N			Y	file	50		Y	Y	N	Original path to the file when it was loaded into the database		
CY_fcs_run	15	n_data_points	Number of Data Points	int	4	0	Y		N			N	text	20		Y	Y	N	Number of data points in this FCS Run		
CY_fcs_run	16	run_date	Run Date	datetime	8	0	Y	CURRENT_TIMESTAMP	N			N	text	20		Y	Y	N	Datetime when this FCS Run was performed (originally the system date of the FCS Run file but changeable)		
CY_fcs_run	17	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
CY_fcs_run	18	showFlag	Show Status	int 	4	0	Y	1	N			N	text	1		Y	Y	N	Set Show Status to '1' if this is an unique and/or important sort otherwise set it to '0' 		
CY_fcs_run	19	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_fcs_run	20	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
CY_fcs_run	21	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_fcs_run	22	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
CY_fcs_run	23	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
CY_fcs_run	24	record_status	Record Status	char	1	0	N	N	N							N	N				
CY_fcs_run_parameters	1	fcs_run_parameters_id	FCS Run Parameter ID	int	4	0	N		Y							N	N	N			pkDEFAULT
CY_fcs_run_parameters	2	fcs_run_id	FCS Run ID	int	4	0	N		N	CY_fcs_run	fcs_run_id	Y				N	N	Y	FCS Run to which this search parameter belongs		
CY_fcs_run_parameters	3	measured_parameters_id	Measured Parameters ID	int	4	0	N		N	CY_measured_parameters	measured_parameters_id	Y				N	Y	N	Monotonically increasing number to denote key order		
CY_fcs_run_parameters	4	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N			 				N	N				
CY_fcs_run_parameters	5	created_by_id	Record Created By	int	4	0	N		N	contact	contact_id					N	N				
CY_fcs_run_parameters	6	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_fcs_run_parameters	7	modified_by_id	Record Modified By	int	4	0	N		N	contact	contact_id					N	N				
CY_fcs_run_parameters	8	owner_group_id	Owner Group ID	int	4	0	N		N	work_group	work_group_id					N	N				
CY_fcs_run_parameters	9	record_status	Record Status	char	1	0	N	N	N							N	N				
CY_query_option	1	query_option_id	Query Option ID	int	4	0	N		Y							N	N				pkDEFAULT
CY_query_option	2	option_type	Option Type	varchar	255	0	N		N			Y	text	50		Y	Y	Y	Type or category of this option		
CY_query_option	3	option_key	Option Key	varchar	255	0	N		N			Y	text	50		Y	Y	Y	Key for this key/value pair option		
CY_query_option	4	option_value	Option Value	varchar	255	0	Y		N			Y	text	50		Y	Y	N	Value of this key/value pair option		
CY_query_option	5	sort_order	Sort Order	int	4	0	N	10	N			N	text	10		Y	Y	N	Numbers which override alphabetical sorting in a list box		
CY_query_option	6	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_query_option	7	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
CY_query_option	8	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_query_option	9	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
CY_query_option	10	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
CY_query_option	11	record_status	Record Status	char	1	0	N	N	N							N	N				
CY_AddFCSRuns	1	project_id	Project	int	4	0	N	Urological Epithelial Stem Cells	N	project	project_id	Y	optionlist	4	refreshDocument()	Y	Y	N	Project to which the FCS Run belongs	"SELECT DISTINCT P.project_id,UL.username+' - '+P.name + '['+P.budget+']'FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' AND project_id IN ( $accessible_project_ids ) ORDER BY UL.username+' - '+P.name + '['+P.budget+']',P.project_id"	
CY_AddFCSRuns	2	organism_id	Organism	int	4	0	N		N	organism	organism_id	Y	optionlist			Y	Y	N	Organism from which this sample was acquired	"SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER  BY sort_order,organism_name"	
CY_AddFCSRuns	3	filepath	Filepath	varchar	255	0	N		N			Y	text	50		Y	Y	N	Path where the FCS file to be added to this project are located (e.g. /users/adiercks/fcs/bugjuice).  This directory must be world readable to the server can read the files in it		
CY_measured_parameters	1	measured_parameters_id	Measured Parameters ID	int	4	0	N		Y							N	N				pkDEFAULT
CY_measured_parameters	2	project_id	Project	int	4	0	N		N	project	project_id	Y	optionlist			Y	Y	N	Project to which the FCS Run belongs	"SELECT DISTINCT P.project_id,UL.username+' - '+P.name + '['+P.budget+']'FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' AND project_id IN ( $accessible_project_ids ) ORDER BY UL.username+' - '+P.name + '['+P.budget+']',P.project_id"	
CY_measured_parameters	3	measured_parameters_name	Measured Parameters Name	varchar	100	0	N		N			Y	text	50		Y	Y	Y	Name of a New Measured Parameter		
CY_measured_parameters	4	prefered_name	Prefered Name	varchar	255	0	Y		N			N	text	50		Y	Y	N	Prefered Name of this channel		
CY_measured_parameters	5	measured_parameters_description	Description of Measured Parameter	text	16	0	Y		N			N	text	50		Y	Y				
CY_measured_parameters	6	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N			 				N	N				
CY_measured_parameters	7	created_by_id	Record Created By	int	4	0	N		N	contact	contact_id					N	N				
CY_measured_parameters	8	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_measured_parameters	9	modified_by_id	Record Modified By	int	4	0	N		N	contact	contact_id					N	N				
CY_measured_parameters	10	owner_group_id	Owner Group ID	int	4	0	N		N	work_group	work_group_id					N	N				
CY_measured_parameters	11	record_status	Record Status	char	1	0	N	N	N							N	N				
CY_sort_entity	1	sort_entity_id	Sort Entity ID	int	4	0	N		Y							N	N				pkDEFAULT
CY_sort_entity	2	project_id	Project	int	4	0	N		N	project	project_id	Y	optionlist			Y	Y	N	Project to which the FCS Run belongs	"SELECT DISTINCT P.project_id,UL.username+' - '+P.name + '['+P.budget+']'FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' AND project_id IN ( $accessible_project_ids ) ORDER BY UL.username+' - '+P.name + '['+P.budget+']',P.project_id"	
CY_sort_entity	3	sort_entity_name	Sort Entity Name 	varchar	255	0	N		N			Y	text	50		Y	Y	Y	"Name of Sort Entity (eg.: Antibody name, Dye name)"		
CY_sort_entity	4	sort_entity_description	Sort Entity Description	varchar	255	0	N		N			N	text	50		Y	Y		Short Description of Sort Entity		
CY_sort_entity	5	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
CY_sort_entity	6	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_sort_entity	7	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
CY_sort_entity	8	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_sort_entity	9	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
CY_sort_entity	10	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
CY_sort_entity	11	record_status	Record Status	char	1	0	N	N	N							N	N				
CY_tissue_type	1	tissue_type_id	Tissue Type ID	int	4	0	N		Y							N	N				pkDEFAULT
CY_tissue_type	2	project_id	Project	int	4	0	N		N	project	project_id	Y	optionlist			Y	Y	N	Project to which the FCS Run belongs	"SELECT DISTINCT P.project_id,UL.username+' - '+P.name + '['+P.budget+']'FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' AND project_id IN ( $accessible_project_ids ) ORDER BY UL.username+' - '+P.name + '['+P.budget+']',P.project_id"	
CY_tissue_type	3	tissue_type_name	Tissue Type Name	varchar	255	0	N		Y			Y	text	50		Y	Y	Y	Name of Tissue used for Sort		
CY_tissue_type	4	tissue_type_description	Tissue Type Description	varchar	255	0	N		N			N	text	50		Y	Y		Cell types used for Sort or being sorted		
CY_tissue_type	5	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
CY_tissue_type	6	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_tissue_type	7	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
CY_tissue_type	8	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_tissue_type	9	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
CY_tissue_type	10	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
CY_tissue_type	11	record_status	Record Status	char	1	0	N	N	N							N	N				
CY_sort_type	1	sort_type_id	Sort Type ID	int	4	0	N		Y							N	N				pkDEFAULT
CY_sort_type	2	sort_type_name	Sort Type Name	varchar	255	0	N		Y			Y	text	50		Y	Y	Y	Name of Sort Technique		
CY_sort_type	3	sort_type_abbrev	Sort Type Abbreviation	varchar	255	0	N		N			N	text	50		Y	Y	Y	Short Tag		
CY_sort_type	4	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
CY_sort_type	5	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_sort_type	6	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
CY_sort_type	7	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
CY_sort_type	8	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
CY_sort_type	9	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
CY_sort_type	10	record_status	Record Status	char	1	0	N	N	N							N	N				
CY_cytometry_sample	1	cytometry_sample_id	Cytometry Sample ID	int	4	0	N		Y							N	N				pkDEFAULT
CY_cytometry_sample	2	fcs_run_id	Fcs ID	int	4	0	Y		N	fcs_run	fcs_run_id	Y				N	Y	N	FK to fcs_run.fcs_run_id		
CY_cytometry_sample	3	project_id	Project	int	4	0	N		N	project	project_id	N				N	N	N	FK to project.project_id		
CY_cytometry_sample	4	sample_tag	Sample Tag	varchar	50	0	N		N			Y	text	50		Y	Y	N	Sample Name.  Keep it short.  Do not use any strange characters like /\*&$() (e.g. NP Epi 03-123)		
CY_cytometry_sample	5	full_sample_name	Full Sample Name	varchar	255	0	Y		N			Y	textarea	3		Y	Y	N	"Full Sample Name.  A longer, less cryptic name should be placed here.  It should be long enough so that someone else can understand quickly the general idea of the sample. (e.g. Epithelial cells FACS sorted from ""normal"" prostate tissue from specimen 03-123)"		
CY_cytometry_sample	6	sample_provider_organization_id	Sample Provider	int	4	0	Y		N	organization	organization_id	N	optionlist			Y	Y	N	"Provider of this biomaterial (academic department, research lab, vendor, etc.)"	"SELECT O.organization_id,O.organization FROM $TB_ORGANIZATION O INNER JOIN $TB_ORGANIZATION_TYPE OT ON (O.organization_type_id=OT.organization_type_id) WHERE O.record_status != 'D' ORDER BY organization"
CY_cytometry_sample	7	organism_id	Organism	int	4	0	Y		N	organism	organism_id	N	optionlist			Y	Y	N	Organism from which the biomaterial was derived	"SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name"
CY_cytometry_sample	8	strain_or_line	Strain or Line	varchar	255	0	Y		N			N	text	50		Y	Y	N	Strain or line of the individual	
CY_cytometry_sample	9	individual	Individual	varchar	255	0	Y		N			N	text	50		Y	Y	N	Identifier or name of the individual organism from which the biomaterial was derived	
CY_cytometry_sample	10	sex_ontology_term_id	Sex	int	4	0	Y		N			N	optionlist			Y	Y	N	Sex of the individual	"SELECT MOT2.MGED_ontology_term_id,MOT2.name FROM $TB_MGED_ONTOLOGY_RELATIONSHIP MOR INNER JOIN $TB_MGED_ONTOLOGY_TERM MOT2 ON ( MOR.subject_term_id = MOT2.MGED_ontology_term_id ) WHERE MOR.object_term_id = 5497 ORDER BY MOT2.name"
CY_cytometry_sample	11	age	Age	varchar	255	0	Y		N			N	text	50		Y	Y	N	"Age of the individual at the time of harvest of the biomaterial.  Free form text; include units, developmental stage, and reference point as appropriate (e.g., days since planting, years after birth, minutes after death)"	
CY_cytometry_sample	12	organism_part	Organism Part	varchar	255	0	Y		N			N	text	50		Y	Y	N	"Part of the organism's anatomy from the biomaterial was derived, excludes cells. (e.g., tissue, organ, system, or body location)"	
CY_cytometry_sample	13	cell_line	Cell Line	varchar	255	0	Y		N			N	text	50		Y	Y	N	Identifier for the cell line if one was used as a biomaterial	
CY_cytometry_sample	14	cell_type	Cell Type	varchar	255	0	Y		N			N	text	50		Y	Y	N	"Type of cell used as the biomaterial (e.g., epithelial, glial, etc.)"	
CY_cytometry_sample	15	disease_state	Disease State	varchar	255	0	Y		N			N	text	50		Y	Y	N	"Name of the pathology diagnosed in the organism from which the biomaterial was derived.  The disease state is ""normal"" if no disease state has been diagnosed."	
CY_cytometry_sample	16	protocol_deviations	Protocol Deviations	text	16	0	Y		N			N	textarea	4		Y	Y	N	Describe any deviations from the selected protocols	
CY_cytometry_sample	17	sample_description	Sample Description	text	16	0	Y		N			N	textarea	4		Y	Y	N	Describe the biomaterial briefly	
CY_cytometry_sample	18	sample_preparation_date	Sample Preparation Date	datetime	8	0	N		N			N	text	30		Y	Y	Y	Date/time the biomaterial was prepared with the described protocols	
CY_cytometry_sample	19	treatment_description	Treatment Description	text	16	0	Y		N			N	textarea	4		Y	Y	N	"Describe the treatment of the biomaterials, including mention of the selected protocols"	
CY_cytometry_sample	29	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional notes	
CY_cytometry_sample	21	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	Y	N		
CY_cytometry_sample	22	created_by_id	Record Created By	int	4	0	N		N	contact	contact_id					N	N	Y			
CY_cytometry_sample	23	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N	N			
CY_cytometry_sample	24	modified_by_id	Record Modified By	int	4	0	N		N	contact	contact_id					N	N	Y			
CY_cytometry_sample	25	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N	Y			
CY_cytometry_sample	26	record_status	Record Status	char	1	0	N	N	N							N	N	N			
CY_fcs_run_data_point	1	fcs_data_point_id	Data Point ID	int	4	0	N		Y							N	N	Y	Run Data Point ID		pkDEFAULT
CY_fcs_run_data_point	2	fcs_run_parameters_id	Run Parameters ID	int	4	0	N		N	fcs_run_parameters	fcs_run_parameters_id	Y				Y	N	N	FK to fcs_run_parameters		
CY_fcs_run_data_point	3	fcs_value	Data Point Value	int	4	0	N		N			Y				Y	N	N	Value of data point