table_name	column_index	column_name	column_title	datatype	scale	precision	nullable	default_value	is_auto_inc	fk_table	fk_column_name	is_required	input_type	input_length	onChange	is_data_column	is_display_column	is_key_field	column_text	optionlist_query	url
GT_biosequence_set	1	biosequence_set_id	BioSequence Set ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_biosequence_set	2	project_id	Owner Project	int	4	0	N		N	project	project_id	Y	optionlist			Y	Y	N	Project under which this Biosequence Set is organized and for which user privileges is controlled	"SELECT DISTINCT P.project_id,UL.username+' - '+P.name FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' AND P.project_id IN ( $accessible_project_ids ) ORDER BY UL.username+' - '+P.name,P.project_id"	
GT_biosequence_set	3	organism_id	Organism	int	4	0	N		N	organism	organism_id	Y	optionlist			Y	Y	N	Organism to which the BioSequences in this database belong	"SELECT organism_id, organism_name FROM $TB_ORGANISM ORDER BY sort_order,organism_name"	
GT_biosequence_set	4	set_name	Set Name	varchar	100	0	N		N			Y	text	50		Y	Y	N	Name of this BioSequence database		
GT_biosequence_set	5	set_tag	Set Tag	varchar	50	0	N		N			Y	text	20		Y	Y	Y	Short tag (name) of this BioSequence database		
GT_biosequence_set	6	set_description	Set Description	varchar	255	0	N		N			Y	text	50		Y	Y	N	Longer description of this BioSequence database		
GT_biosequence_set	7	set_version	Set Version	varchar	50	0	N		N			Y	text	40		Y	Y	N	Version of this BioSequence database		
GT_biosequence_set	8	polymer_type_id	Polymer Type	int	4	0	N		N	BL_polymer_type	polymer_type_id	Y	optionlist			Y	Y	N	"Polymer type (e.g. protein, DNA, RNA) for the BioSequences in this database"	"SELECT polymer_type_id, polymer_type_name FROM $TBBL_POLYMER_TYPE ORDER BY sort_order,polymer_type_name"	
GT_biosequence_set	9	upload_file	Upload file	varchar	255	0	Y		N			N	file	40		Y	Y	N	File path of this BioSequence database if to be uploaded via the web interface		
GT_biosequence_set	10	set_path	Set Path	varchar	255	0	N		N			Y	text	50		Y	Y	N	File path of this BioSequence database		
GT_biosequence_set	11	source_file_date	Source File Date	datetime	8	0	Y		N			N	text	40		N	N	N	Date of the FASTA file at last update		
GT_biosequence_set	12	uri	URI	varchar	255	0	Y		N			N	text	50		Y	Y	N	External web page or other URI		SELF
GT_biosequence_set	13	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_biosequence_set	14	sort_order	Sort Order	int	4	0	N	10	N			Y	text	20		Y	Y	N	Allows the ordering or ranking of Biosequence Sets which is used to break ties for choosing canonical names.  Lower numbers indicate better rank.		
GT_biosequence_set	15	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_biosequence_set	16	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_biosequence_set	17	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_biosequence_set	18	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_biosequence_set	19	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_biosequence_set	20	record_status	Record Status	char	1	0	N	N	N							N	N				
GT_dbxref	1	dbxref_id	dbxref ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_dbxref	2	dbxref_name	CrossRef Name	varchar	50	0	N		N			Y	text	40		Y	Y	N	Name of this Database Cross Reference		
GT_dbxref	3	dbxref_tag	CrossRef Tag	varchar	20	0	N		N			Y	text	20		Y	Y	Y	Short tag (name) of this Database Cross Reference		
GT_dbxref	4	dbxref_description	Description	varchar	255	0	N		N			Y	text	50		Y	Y	N	Longer description of this Database Cross Reference		
GT_dbxref	5	accessor	Accessor	varchar	255	0	N		N			Y	text	50		Y	Y	N	Part of a URL or URI to which an accession number can be appended to get more information about the entity using this cross reference		
GT_dbxref	6	accessor_suffix	Accessor Suffix	varchar	255	0	Y		N			N	text	50		Y	Y	N	Part of a URL or URI which comes after the accession number to build the full URL to get more information about the entity using this cross reference		
GT_dbxref	7	uri	URI	varchar	255	0	N		N			Y	text	50		Y	Y	N	External web page or other URI of the database		SELF
GT_dbxref	8	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_dbxref	9	sort_order	Sort Order	int	4	0	N	10	N							N	N	N			
GT_dbxref	10	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_dbxref	11	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_dbxref	12	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_dbxref	13	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_dbxref	14	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_dbxref	15	record_status	Record Status	char	1	0	N	N	N							N	N				
GT_biosequence	1	biosequence_id	BioSequence ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_biosequence	2	biosequence_set_id	BioSequence Set	int	4	0	N		N	GT_biosequence_set	biosequence_set_id					N	N	Y	BioSequence Set to which this BioSequence belongs		
GT_biosequence	3	biosequence_name	BioSequence Name	varchar	255	0	N		N			Y	text	50		Y	Y	Y	Name of this BioSequence (generally everything before the first space in a FASTA file header line)		
GT_biosequence	4	biosequence_gene_name	BioSequence Gene Name	varchar	255	0	Y		N			Y	text	20		Y	Y	N	Gene name of this BioSequence if applicable.  Most common gene name if applicable		
GT_biosequence	5	dbxref_id	Database Cross Reference	int	4	0	Y		N	GT_dbxref	dbxref_id					Y	Y	N	Database cross reference for which the accession number applies		pkDEFAULT
GT_biosequence	6	biosequence_accession	BioSequence Accession	varchar	255	0	Y		N			Y	text	50		Y	Y	N	Accession number for this BioSequence in some external database designated above		
GT_biosequence	7	biosequence_desc	Biosequence Description	varchar	1024	0	N		N			Y	text	40		Y	Y	N	Description of this BioSequence (generally everything after the first space in a FASTA file header line)		
GT_biosequence	8	biosequence_seq	Sequence	text	16	0	Y		N			N	file	40		Y	Y	N	Actual sequence of the BioSequence if known		
GT_biosequence_property_set	1	biosequence_property_set_id	BioSequence Property Set ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_biosequence_property_set	2	biosequence_id	BioSequence ID	int	4	0	N		N	GT_biosequence	biosequence_id					N	N	Y	Biosequence to which this Biosequence property set belongs		
GT_biosequence_property_set	3	n_transmembrane_regions	Number of Transmembrane Regions	int	4	0	Y		N							Y	Y	N	Number of transmembrane regions		
GT_biosequence_property_set	4	transmembrane_class	Transmembrane Region Class	varchar	10	0	Y		N			Y	text	50		Y	Y	N	"Class of the transmembrane region.  May be 0, TM, A, S, TM_xS based on output from TMHMM and signalP"		
GT_biosequence_property_set	5	transmembrane_topology	Transmembrane Region Topology	varchar	1024	0	Y		N			Y	text	20		Y	Y	N	Coding of which residues belong in the transmembrane regions		
GT_biosequence_property_set	6	has_signal_peptide	Has a Signal Peptide	char	1	0	Y		N			N	text	50		Y	Y	N	"Does this protein have a signal peptide on the end Y/N? (Note that Y means that there is some non-zero probability that it does, not that is necessarily does)"		
GT_biosequence_property_set	7	has_signal_peptide_probability	Probability that it has a Signal Peptide	real	4	0	Y		N			N	text	50		Y	Y	N	Probability that there is a signal peptide on the end as calculated by SignalP		
GT_biosequence_property_set	8	signal_peptide_length	Length of the Signal Peptide	int	4	0	Y		N			N	text	50		Y	Y	N	Length in residues of the signal peptide		
GT_biosequence_property_set	9	signal_peptide_is_cleaved	Signal Peptide gets Cleaved	char	1	0	Y		N			N	text	50		Y	Y	N	Does the signal peptide get cleaved off Y/N?		
GT_biosequence_property_set	10	genome_build	Genome Build	varchar	50	0	Y		N			N	text	50		Y	Y	N	Genome build name for which the following mapping parameters are valid		
GT_biosequence_property_set	11	chromosome	Chromosome	varchar	50	0	Y		N			N	text	50		Y	Y	N	Chromosome in which this mapping occurs		
GT_biosequence_property_set	12	start_in_chromosome	Start Position in Chromosome	int	4	0	Y		N			N	text	20		Y	Y	N	Start position of the biosequence in the chromosome		
GT_biosequence_property_set	13	end_in_chromosome	End Position in Chromosome	int	4	0	Y		N			N	text	20		Y	Y	N	End position of the biosequence in the chromosome		
GT_biosequence_property_set	14	strand	Strand	char	1	0	Y		N			N	text	10		Y	Y	N	"Strand (+,-) of the biosequence in the chromosome"		
GT_query_option	1	query_option_id	Query Option ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_query_option	2	option_type	Option Type	varchar	255	0	N		N			Y	text	50		Y	Y	Y	Type or category of this option		
GT_query_option	3	option_key	Option Key	varchar	255	0	N		N			Y	text	50		Y	Y	Y	Key for this key/value pair option		
GT_query_option	4	option_value	Option Value	varchar	255	0	Y		N			Y	text	50		Y	Y	N	Value of this key/value pair option		
GT_query_option	5	sort_order	Sort Order	int	4	0	N	10	N			N	text	10		Y	Y	N	Numbers which override alphabetical sorting in a list box		
GT_query_option	6	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_query_option	7	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_query_option	8	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_query_option	9	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_query_option	10	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_query_option	11	record_status	Record Status	char	1	0	N	N	N							N	N				
GT_BrowseBioSequence	1	biosequence_set_id	BioSequence Sets									N	multioptionlist	4		Y	Y	N	"Select desired BioSequence Sets to include in query.  Multiple items may be selected.  If no items are selected, ALL sets are searched."	"SELECT biosequence_set_id,set_name FROM $TBGT_BIOSEQUENCE_SET ORDER BY sort_order,set_name"	
GT_BrowseBioSequence	2	biosequence_name_constraint	Name Constraint									N	text	40		Y	Y	N	Constraint for the BioSequence Name. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
GT_BrowseBioSequence	3	biosequence_gene_name_constraint	Gene Name Constraint									N	text	40		Y	Y	N	Constraint for the BioSequence Gene Name. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
GT_BrowseBioSequence	4	molecular_function_constraint	Molecular Function Constraint									N	text	40		Y	Y	N	Constraint for the GO Molecular Function. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
GT_BrowseBioSequence	5	biological_process_constraint	Biological Process Constraint									N	text	40		Y	Y	N	Constraint for the GO Biological Process. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
GT_BrowseBioSequence	6	cellular_component_constraint	Cellular Component Constraint									N	text	40		Y	Y	N	Constraint for the GO Cellular Component. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
GT_BrowseBioSequence	7	protein_domain_constraint	Protein Domain Constraint									N	text	40		Y	Y	N	Constraint for the InterPro Protein Domain. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
GT_BrowseBioSequence	8	fav_codon_frequency_constraint	Favored Codon Frequency Constraint									N	text	40		Y	Y	N	"Constraint for the favored codon frequency (calculation by Patrick Pedrioli).  Allowed syntax: ""n.n"", ""> n.n"", ""< n.n"", ""between n.n and n.n"", ""n.n +- n.n"""		
GT_BrowseBioSequence	9	n_transmembrane_regions_constraint	Number of Transmembrane Regions Constraint									N	text	40		Y	Y	N	"Constraint for the number of transmembrane regions (based on a 19-residue wide sliding window of hydropathy indexes above 1.58).  Allowed syntax: ""n"", ""> n"", ""< n"", ""between n and n"", ""n +- n"""		
GT_BrowseBioSequence	10	biosequence_seq_constraint	Sequence Constraint									N	text	40		Y	Y	N	Constraint for the actual sequence. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
GT_BrowseBioSequence	11	biosequence_desc_constraint	Description Constraint									N	text	40		Y	Y	N	Constraint for the BioSequence Description. '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
GT_BrowseBioSequence	12	sort_order	Sort Order									N	optionlist	 		Y	Y	N	Desired display sorting order (DESC means descending: highest to lowest)	"SELECT option_key,option_value FROM $TBGT_QUERY_OPTION WHERE option_type = 'BBS_sort_options' ORDER BY sort_order,option_value"	
GT_BrowseBioSequence	13	display_options	Display Options									N	multioptionlist	3		Y	Y	N	Various selectable table display options	"SELECT option_key,option_value FROM $TBGT_QUERY_OPTION WHERE option_type = 'BBS_display_options' ORDER BY sort_order,option_value"	
GT_BrowseBioSequence	14	row_limit	Maximum Rows									N	text	10		Y	Y	N	"Limit the numbers of rows displayed.  If not provided, default is 100 rows."		
GT_experiment	1	experiment_id	Experiment ID	int	4	0	N		Y						N	N	N				pkDEFAULT
GT_experiment	2	project_id	Project	int	4	0	N		N	project	project_id	Y	optionlist		Y	Y	Y	N	Project this experiment belongs to	"SELECT DISTINCT P.project_id,UL.username+' - '+P.name FROM $TB_PROJECT P LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' AND project_id IN ( $accessible_project_ids ) ORDER BY UL.username+' - '+P.name,P.project_id"	
GT_experiment	3	contact_id	Contact	int	4	0	N		N	contact	contact_id	Y	scrolloptionlist	4		Y	Y	N	PI for this experiment	"SELECT contact_id, last_name+', '+first_name+' ('+organization+')' AS 'name' FROM $TB_CONTACT C JOIN $TB_ORGANIZATION O ON ( C.organization_id = O.organization_id ) ORDER BY last_name,first_name,organization"	
GT_experiment	4	experiment_name	Experiment Name	varchar	50	0	N		N			Y	text	50	Y	Y	Y	N	"Name/Title of this experiment (meaningful & descriptive, please!)"		
GT_experiment	5	experiment_tag	Experiment Tag	varchar	25	0	N		N			Y	text	40	Y	Y	Y	Y	Very short tag (name) of this experiment		
GT_experiment	6	experiment_description	Experiment Description	varchar	255	0	N		N			N	textarea	6	Y	Y	Y	N	Longer description of this experiment		
GT_experiment	7	number_of_samples	Number of Samples	int	4	0	N		N			Y	text	20	Y	Y	Y	N	Number of samples		
GT_experiment	8	number_of_assays	Number of Assays	int	4	0	N		N			Y	text	20	Y	Y	Y	N	Number of Assays		
GT_experiment	9	want_validation	Validation	char	1	0	N		N			Y	optionlist		Y	Y	Y	N	Is validation desired?	"SELECT option_key,option_value FROM $TB_MISC_OPTION WHERE option_type='yesno' ORDER BY sort_order,option_value"	
GT_experiment	10	want_pooling	Pooling	char	1	0	N		N			Y	optionlist		Y	Y	Y	N	Is pooling desired?	"SELECT option_key,option_value FROM $TB_MISC_OPTION WHERE option_type='yesno' ORDER BY sort_order,option_value"	
GT_experiment	11	pooling_set_id	Pooling Set	int	4	0	Y		N	GT_pooling_set	pooling_set_id	N	text	20	Y	Y	Y	N	"Pooling set ID to be used (pulldown: Caucasion, self-supplied)"	"SELECT pooling_set_id,pooling_set_tag FROM $TBGT_POOLING_SET ORDER BY sort_order,pooling_set_tag"	
GT_experiment	12	want_typing	Typing	char	1	0	N		N			Y	optionlist		Y	Y	Y	N	Is typing desired?	"SELECT option_key,option_value FROM $TB_MISC_OPTION WHERE option_type='yesno' ORDER BY sort_order,option_value"	
GT_experiment	13	is_multiplexing_allowed	Multiplexing Allowed?	char	1	0	N		N			Y	optionlist		Y	Y	Y	N	Is Multiplexing allowed?	"SELECT option_key,option_value FROM $TB_MISC_OPTION WHERE option_type='yesno' ORDER BY sort_order,option_value"	
GT_experiment	14	dna_type	Type of DNA	varchar	50	0	N		N	GT_dna_type	dna_type_id	Y	optionlist		Y	Y	Y	N	Type of DNA	"SELECT dna_type_id,dna_type_tag FROM $TBGT_DNA_TYPE ORDER BY sort_order,dna_type_tag"	
GT_experiment	15	dna_extraction_protocol	DNA Extraction Protocol	text	16	0	N		N			Y	textarea	4		Y	Y	N	Brief description of the DNA extraction protocol		
GT_experiment	16	samples_file	Samples file	varchar	255	0	Y		N			N	file	40	Y	Y	Y	N	Select the tab-delimited text file of sample information to be uploaded via the web interface		
GT_experiment	17	assays_file	Assays file	varchar	255	0	Y		N			N	file	40	Y	Y	Y	N	Select the tab-delimited text file of assay information to be uploaded via the web interface		
GT_experiment	18	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_experiment	19	sort_order	Sort Order	int	4	0	N	10	N							N	N	N			
GT_experiment	20	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_experiment	21	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_experiment	22	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_experiment	23	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_experiment	24	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_experiment	25	record_status	Record Status	char	1	0	N	N	N							N	N				
GT_sample	1	sample_id	Sample ID	int	4	0	N		Y			Y			N	N	N		Sample set ID		pkDEFAULT
GT_sample	2	experiment_id	Experiment	int	4	0	N		N	GT_experiment	experiment_id	Y	optionlist		Y	Y	Y	Y	Experiment that this sample belongs to	"SELECT experiment_id,experiment_name FROM $TBGT_EXPERIMENT WHERE record_status != 'D' ORDER BY experiment_name"	
GT_sample	3	plate_id	Plate ID	varchar	50	0	N		N			Y	text	20	Y	Y	Y	Y	Plate ID		
GT_sample	4	well_position	Well Position	varchar	50	0	N		N			Y	text	20	Y	Y	Y	Y	Well position		
GT_sample	5	sample_name	Sample Name/Identifier	varchar	50	0	N		N			Y	text	50	Y	Y	Y	N	Sample name		
GT_sample	6	dna_concentration	DNA Concentration	real	4	0	N		N			Y	text	20	Y	Y	Y	N	Measured DNA concentration (e.g. 10 ng/ul)		
GT_sample	7	initial_well_volume	Initial Well Volume	real	4	0	N		N			Y	text	20	Y	Y	Y	N	Well volume (e.g. 80 ul)		
GT_sample	8	stock_dna_solvent	Stock DNA Solvent	varchar	50	0	N		N			Y	text	20	Y	Y	Y	N	Stock DNA solvent (e.g. TE)		
GT_sample	9	dna_dilution_solvent	DNA Dilution Solvent	varchar	50	0	N		N			Y	text	20	Y	Y	Y	N	DNA dilution solvent (e.g. ddH20)		
GT_sample	10	n_experiments_run	Number of Experiments Run	int	4	0	Y		N			Y	text	20	Y	Y	Y	N	Number of experiments that have been run on this sample		
GT_sample	11	current_well_volume	Current Well Volume	real	4	0	Y		N			Y	text	20	Y	Y	Y	N	Current well volume		
GT_sample	12	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_sample	13	sort_order	Sort Order	int	4	0	N	10	N							N	N	N			
GT_sample	14	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_sample	15	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_sample	16	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_sample	17	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_sample	18	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_sample	19	record_status	Record Status	char	1	0	N	N	N							N	N				
GT_requested_genotyping_assay	1	requested_genotyping_assay_id	Requested Genotyping Assay ID	int	4	0	N		Y			Y			N	N	N		Requested Genotyping Assay ID		pkDEFAULT
GT_requested_genotyping_assay	2	experiment_id	Experiment	int	4	0	N		N	GT_experiment	experiment_id	Y	optionlist		Y	Y	Y	Y	Experiment that this assay belongs to	"SELECT experiment_id,experiment_name FROM $TBGT_EXPERIMENT WHERE record_status != 'D' ORDER BY experiment_name"	
GT_requested_genotyping_assay	3	requested_assay_name	Assay Name/Identifier	varchar	50	0	N		N			Y	text	50	Y	Y	Y	N	Assay name		
GT_requested_genotyping_assay	4	requested_assay_sequence	Assay Sequence	text	16	0	N		N			Y	text	16	Y	Y	Y	N	"Assay sequence, of form ATATA[C/G]AATAT"		
GT_requested_genotyping_assay	5	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_requested_genotyping_assay	6	sort_order	Sort Order	int	4	0	N	10	N							N	N	N			
GT_requested_genotyping_assay	7	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_requested_genotyping_assay	8	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_requested_genotyping_assay	9	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_requested_genotyping_assay	10	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_requested_genotyping_assay	11	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_requested_genotyping_assay	12	record_status	Record Status	char	1	0	N	N	N							N	N				
GT_pooling_set	1	pooling_set_id	Pooling Set ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_pooling_set	2	pooling_set_tag	Set Tag	varchar	50	0	N		N			Y	text	20		Y	Y	Y	Short tag (name) of this Pooling Set		
GT_pooling_set	3	pooling_set_description	Set Description	varchar	255	0	N		N			Y	text	50		Y	Y	N	Longer description of this Pooling Set		
GT_pooling_set	4	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_pooling_set	5	sort_order	Sort Order	int	4	0	N	10	N			N	text	10		Y	Y	N	Numbers which override alphabetical sorting in a list box		
GT_pooling_set	6	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_pooling_set	7	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_pooling_set	8	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_pooling_set	9	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_pooling_set	10	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_pooling_set	11	record_status	Record Status	char	1	0	N	N	N							N	N				
GT_dna_type	1	dna_type_id	DNA Type ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_dna_type	2	dna_type_tag	DNA Type Tag	varchar	50	0	N		N			Y	text	20		Y	Y	Y	Short tag (name) of this DNA type		
GT_dna_type	3	dna_type_description	DNA Type Description	varchar	255	0	N		N			Y	text	50		Y	Y	N	Longer description of this DNA Type		
GT_dna_type	4	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_dna_type	5	sort_order	Sort Order	int	4	0	N	10	N			N	text	10		Y	Y	N	Numbers which override alphabetical sorting in a list box		
GT_dna_type	6	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_dna_type	7	created_by_id	Record Created By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_dna_type	8	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_dna_type	9	modified_by_id	Record Modified By	int	4	0	N	1	N	contact	contact_id					N	N				
GT_dna_type	10	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_dna_type	11	record_status	Record Status	char	1	0	N	N	N							N	N				
GT_cost_scheme	1	cost_scheme_id	Cost Scheme ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_cost_scheme	2	cost_scheme_name	Scheme Name	varchar	50	0	N		N			Y	text	50		Y	Y	Y	Short name of this cost scheme		
GT_cost_scheme	3	price	Price	real	4	0	N		N			Y	text	50		Y	Y	N	Price per 384 well plate		
GT_cost_scheme	4	comment	Comment	varchar	255	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_cost_scheme	5	sort_order	Sort Order	int	4	0	N	10	N							N	N	N			
GT_cost_scheme	6	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_cost_scheme	7	created_by_id	Record Created By	int	4	0	N		N	contact	contact_id					N	N				
GT_cost_scheme	8	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_cost_scheme	9	modified_by_id	Record Modified By	int	4	0	N		N	contact	contact_id					N	N				
GT_cost_scheme	10	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_cost_scheme	11	record_status	Record Status	char	1	0	N	N	N							N	N				
GT_GetGenotypesMS	1	project_id	Project									N	multioptionlist	3	refreshDocument()	Y	Y	N	Select desired projects to query.  Multiple items may be selected.	"SELECT DISTINCT P.project_id,UL.username+' - '+P.name FROM $TB_PROJECT P INNER JOIN $TBGT_MICROSATELLITE_GENOTYPE_CALL C ON ( P.project_id = C.project_id ) LEFT JOIN $TB_USER_LOGIN UL ON ( P.PI_contact_id=UL.contact_id ) WHERE P.record_status != 'D' ORDER BY UL.username+' - '+P.name,P.project_id"	
GT_GetGenotypesMS	2	gel_name	Gel Name									N	multioptionlist	8		Y	Y	N	Select desired gels to query.  Multiple items may be selected.	"SELECT distinct gel_name,gel_name FROM $TBGT_MICROSATELLITE_GENOTYPE_CALL WHERE project_id IN ( $parameters{project_id} ) ORDER BY gel_name"	
GT_GetGenotypesMS	3	assay_name	Assay Name/Identifier									N	text	40		Y	Y	N	Constraint for assay name.  '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
GT_GetGenotypesMS	4	sample_name	Sample Name/Identifier									N	text	40		Y	Y	N	Constraint for sample name.  '%' is wildcard character; '_' is single character wildcard; character range is like '[a-m]'; no other regexps supported.		
GT_GetGenotypesMS	5	minor_allele_limit	Minor Allele Limit									N	text	40		Y	Y	N	"Set cutoff value for flagging low minor allele frequencies.  Acceptable range is [0,1]."		
GT_GetGenotypesMS	6	view_style	View Style									N	optionlist			Y	Y	N	Select desired data view.	"SELECT option_key,option_value FROM $TBGT_QUERY_OPTION WHERE option_type = 'GG_view_style' ORDER BY sort_order,option_value"	
GT_GetGenotypesMS	7	display_options	Display Options									N	multioptionlist	3		Y	Y	N	Various selectable table display options.  Multiple items may be selected.	"SELECT option_key,option_value FROM $TBGT_QUERY_OPTION WHERE option_type = 'GG_display_options' ORDER BY sort_order,option_value"	
GT_manual_genotype_call	1	manual_genotype_call_id	Manual Genotype Call ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_manual_genotype_call	2	project_id	Project	varchar	255	0	N		N			Y	fixed			Y	Y	Y	Project to which the genotype call belongs		
GT_manual_genotype_call	3	gel_name	Gel Name	varchar	255	0	N		N			Y	fixed			Y	Y	Y	Gel of the genotype call		
GT_manual_genotype_call	4	assay_name	Assay Name/Identifier	varchar	255	0	N		N			Y	fixed			Y	Y	Y	Assay of the genotype call		
GT_manual_genotype_call	5	sample_name	Sample Name/Identifier	varchar	20	0	N		N			Y	text	10		Y	Y	N	Sample name		
GT_manual_genotype_call	6	genotype_call	Genotype Call	varchar	20	0	N		N			Y	text	10		Y	Y	N	"Genotype call in a form like T/T or T/C, etc."		
GT_manual_genotype_call	7	call_quality	Call Quality	varchar	255	0	N		N			N	optionlist			Y	Y	N	Genotype call quality	"SELECT 'NotUsed','NotUsed'"	
GT_manual_genotype_call	8	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_manual_genotype_call	9	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_manual_genotype_call	10	created_by_id	Record Created By	int	4	0	N		N	contact	contact_id					N	N				
GT_manual_genotype_call	11	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_manual_genotype_call	12	modified_by_id	Record Modified By	int	4	0	N		N	contact	contact_id					N	N				
GT_manual_genotype_call	13	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_manual_genotype_call	14	record_status	Record Status	char	1	0	N	N	N							N	N	N			
GT_microsatellite_genotype_call	1	microsatellite_genotype_call_id	Microsatellite Genotype Call ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_microsatellite_genotype_call	2	project_id	Project	int	4	0	N		N	project	project_id	Y	fixed			Y	Y	Y	Project to which the genotype call belongs		
GT_microsatellite_genotype_call	3	gel_name	Gel Name	varchar	255	0	N		N			Y	fixed			Y	Y	Y	Gel name of the genotype call		
GT_microsatellite_genotype_call	4	assay_name	Assay Name/Identifier	varchar	255	0	N		N			Y	fixed			Y	Y	Y	Assay of the genotype call		
GT_microsatellite_genotype_call	5	sample_name	Sample Name/Identifier	varchar	255	0	N		N			Y	fixed			Y	Y	Y	Sample name		
GT_microsatellite_genotype_call	6	sample_description	Sample Description	varchar	255	0	Y		N			Y	fixed			Y	Y	Y	Sample Description		
GT_microsatellite_genotype_call	7	genotype_call	Genotype Call	varchar	255	0	N		N			Y	fixed			Y	Y	Y	Genotype call		
GT_experiment_status	1	experiment_status_id	Experiment Status ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_experiment_status	2	experiment_id	Experiment ID	int	4	0	N		N	GT_experiment	experiment_id	Y	fixed			Y	Y	Y	Experiment that this assay belongs to	"SELECT experiment_id,experiment_name FROM $TBGT_EXPERIMENT WHERE record_status != 'D' ORDER BY experiment_name"	
GT_experiment_status	3	initial_request_date	Initial Request Date	datetime	8	0	N		N			Y	fixed			Y	Y	N	Date experiment initially registered		
GT_experiment_status	4	experiment_status_state_id	Experiment Status State ID	int	4	0	N		N	GT_experiment_status_state	experiment_status_state_id	Y	optionlist			Y	Y	N	Current status level of the experiment	"SELECT experiment_status_state_id,experiment_status_state_name FROM $TBGT_EXPERIMENT_STATUS_STATE ORDER BY sort_order,experiment_status_state_name"	
GT_experiment_status	5	file_formats_approved	File Format Approval Status	varchar	50	0	Y		N			N	optionlist			Y	Y	N	"Pending, Approved, or Failed"	"SELECT option_key,option_value FROM $TBGT_QUERY_OPTION WHERE option_type='approval_status' ORDER BY sort_order,option_value"	
GT_experiment_status	6	DNA_delivery_date	DNA Delivery Date	datetime	8	0	Y		N			N	textdate			Y	Y	N	Date DNA delivered		
GT_experiment_status	7	DNA_quality_approved	DNA Quality Approval Status	varchar	50	0	Y		N			N	optionlist			Y	Y	N	"Pending, Approved, or Failed"	"SELECT option_key,option_value FROM $TBGT_QUERY_OPTION WHERE option_type='approval_status' ORDER BY sort_order,option_value"	
GT_experiment_status	8	preliminary_checks_completed_date	Preliminary Checks Completion Date	datetime	8	0	Y		N			N	textdate			Y	Y	N	Date all preliminary checks completed		
GT_experiment_status	9	estimated_completion_date	Estimated Completion Date	datetime	8	0	Y		N			N	textdate			Y	Y	N	Estimated completion date		
GT_experiment_status	10	final_completion_date	Final Completion Date	datetime	8	0	Y		N			N	textdate			Y	Y	N	Final completion date		
GT_experiment_status	11	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_experiment_status	12	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_experiment_status	13	created_by_id	Record Created By	int	4	0	N		N	contact	contact_id					N	N				
GT_experiment_status	14	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_experiment_status	15	modified_by_id	Record Modified By	int	4	0	N		N	contact	contact_id					N	N				
GT_experiment_status	16	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_experiment_status	17	record_status	Record Status	char	1	0	N	N	N							N	N	N			
GT_experiment_status_state	1	experiment_status_state_id	Experiment Status State ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_experiment_status_state	2	experiment_status_state_name	Experiment Status State Name	varchar	50	0	N		N			Y	text	30		Y	Y	Y	Short tag (name) of this experiment status state		
GT_experiment_status_state	3	experiment_status_state_desc	Experiment Status State Description	varchar	255	0	N		N			Y	textarea	4		Y	Y	N	Longer description of this experiment status state		
GT_experiment_status_state	4	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_experiment_status_state	5	sort_order	Sort Order	int	4	0	N	10	N							N	N	N			
GT_experiment_status_state	6	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_experiment_status_state	7	created_by_id	Record Created By	int	4	0	N		N	contact	contact_id					N	N				
GT_experiment_status_state	8	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_experiment_status_state	9	modified_by_id	Record Modified By	int	4	0	N		N	contact	contact_id					N	N				
GT_experiment_status_state	10	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_experiment_status_state	11	record_status	Record Status	char	1	0	N	N	N							N	N	N			
GT_experiment_status_history	1	experiment_status_history_id	Experiment Status History ID	int	4	0	N		Y							N	N				pkDEFAULT
GT_experiment_status_history	2	experiment_status_id	Experiment Status ID	int	4	0	N		N			Y	fixed		Y	Y	Y	Y	Experiment status record	"SELECT experiment_id,experiment_name FROM $TBGT_EXPERIMENT WHERE record_status != 'D' ORDER BY experiment_name"	
GT_experiment_status_history	3	experiment_id	Experiment ID	int	4	0	N		N	GT_experiment	experiment_id	Y	optionlist		Y	Y	Y	Y	Experiment that this assay belongs to	"SELECT experiment_id,experiment_name FROM $TBGT_EXPERIMENT WHERE record_status != 'D' ORDER BY experiment_name"	
GT_experiment_status_history	4	initial_request_date	Initial Request Date	datetime	8	0	N		N			Y	textdate			Y	Y	N	Date experiment initially registered		
GT_experiment_status_history	5	experiment_status_state_id	Experiment Status State ID	int	4	0	N		N	GT_experiment_status_state	experiment_status_state_id	Y	optionlist		Y	Y	Y	N	Current status level of the experiment	"SELECT experiment_status_state_id,experiment_status_state_name FROM $TBGT_EXPERIMENT_STATUS_STATE ORDER BY sort_order,experiment_status_state_name"	
GT_experiment_status_history	6	file_formats_approved	File Format Approval Status	varchar	50	0	Y		N			N	optionlist			Y	Y	N	"Pending, Approved, or Failed"	"SELECT option_key,option_value FROM $TBGT_QUERY_OPTION WHERE option_type='approval_status' ORDER BY sort_order,option_value"	
GT_experiment_status_history	7	DNA_delivery_date	DNA Delivery Date	datetime	8	0	Y		N			N	textdate			Y	Y	N	Date DNA delivered		
GT_experiment_status_history	8	DNA_quality_approved	DNA Quality Approval Status	varchar	50	0	Y		N			N	optionlist			Y	Y	N	"Pending, Approved, or Failed"	"SELECT option_key,option_value FROM $TBGT_QUERY_OPTION WHERE option_type='approval_status' ORDER BY sort_order,option_value"	
GT_experiment_status_history	9	preliminary_checks_completed_date	Preliminary Checks Completion Date	datetime	8	0	Y		N			N	textdate			Y	Y	N	Date all preliminary checks completed		
GT_experiment_status_history	10	estimated_completion_date	Estimated Completion Date	datetime	8	0	Y		N			N	textdate			Y	Y	N	Estimated completion date		
GT_experiment_status_history	11	final_completion_date	Final Completion Date	datetime	8	0	Y		N			N	textdate			Y	Y	N	Final completion date		
GT_experiment_status_history	12	comment	Comment	text	16	0	Y		N			N	textarea	4		Y	Y	N	Additional comments		
GT_experiment_status_history	13	date_created	Date Record Created	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_experiment_status_history	14	created_by_id	Record Created By	int	4	0	N		N	contact	contact_id					N	N				
GT_experiment_status_history	15	date_modified	Date Record Modified	datetime	8	0	N	CURRENT_TIMESTAMP	N							N	N				
GT_experiment_status_history	16	modified_by_id	Record Modified By	int	4	0	N		N	contact	contact_id					N	N				
GT_experiment_status_history	17	owner_group_id	Owner Group ID	int	4	0	N	1	N	work_group	work_group_id					N	N				
GT_experiment_status_history	18	record_status	Record Status	char	1	0	N	N	N							N	N	N			
